+++ /dev/null
-/*
- VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases.
- Copyright (C) 2008 Kevin Darty, Alain Denise and Yann Ponty.
- electronic mail : Yann.Ponty@lri.fr
- paper mail : LRI, bat 490 Université Paris-Sud 91405 Orsay Cedex France
-
- This file is part of VARNA version 3.1.
- VARNA version 3.1 is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
-
- VARNA version 3.1 is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
- without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
- See the GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License along with VARNA version 3.1.
- If not, see http://www.gnu.org/licenses.
- */
-package fr.orsay.lri.varna.applications;
-
-import java.awt.BorderLayout;
-import java.awt.Color;
-import java.awt.Dimension;
-import java.awt.Font;
-import java.awt.GridLayout;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.MouseEvent;
-import java.math.BigInteger;
-import java.util.ArrayList;
-import java.util.Collections;
-
-import javax.swing.BorderFactory;
-import javax.swing.DefaultComboBoxModel;
-import javax.swing.JButton;
-import javax.swing.JComboBox;
-import javax.swing.JFrame;
-import javax.swing.JLabel;
-import javax.swing.JPanel;
-import javax.swing.JTextArea;
-import javax.swing.JTextField;
-import javax.swing.JTextPane;
-import javax.swing.border.BevelBorder;
-
-import fr.orsay.lri.varna.VARNAPanel;
-import fr.orsay.lri.varna.controlers.ControleurInterpolator;
-import fr.orsay.lri.varna.exceptions.ExceptionDrawingAlgorithm;
-import fr.orsay.lri.varna.exceptions.ExceptionFileFormatOrSyntax;
-import fr.orsay.lri.varna.exceptions.ExceptionModeleStyleBaseSyntaxError;
-import fr.orsay.lri.varna.exceptions.ExceptionNAViewAlgorithm;
-import fr.orsay.lri.varna.exceptions.ExceptionNonEqualLength;
-import fr.orsay.lri.varna.exceptions.ExceptionParameterError;
-import fr.orsay.lri.varna.exceptions.ExceptionUnmatchedClosingParentheses;
-import fr.orsay.lri.varna.exceptions.MappingException;
-import fr.orsay.lri.varna.models.VARNAConfig;
-import fr.orsay.lri.varna.models.VARNAConfig.BP_STYLE;
-import fr.orsay.lri.varna.models.rna.Mapping;
-import fr.orsay.lri.varna.models.rna.ModeleBase;
-import fr.orsay.lri.varna.models.rna.ModelBaseStyle;
-import fr.orsay.lri.varna.models.rna.RNA;
-import fr.orsay.lri.varna.interfaces.InterfaceVARNABasesListener;
-import fr.orsay.lri.varna.interfaces.InterfaceVARNAListener;;
-
-public class NussinovDemo extends JFrame implements InterfaceVARNAListener,InterfaceVARNABasesListener {
-
- /**
- *
- */
- private static final long serialVersionUID = -790155708306987257L;
-
- private static final String SEQUENCE_DUMMY = "AAAAAAAAAA";
- private static final String SEQUENCE_A = "AGGCACGUCU";
- private static final String SEQUENCE_B = "GAGUAGCCUC";
- private static final String SEQUENCE_C = "GCAUAGCUGC";
- private static final String SEQUENCE_INRIA = "GAGAAGUACUUGAAAUUGGCCUCCUC";
-
-
- private static final String SEQUENCE_BIG = "AAAACAAAAACACCAUGGUGUUUUCACCCAAUUGGGUGAAAACAGAGAUCUCGAGAUCUCUGUUUUUGUUUU";
-
- private static final String DEFAULT_STRUCTURE = "..........";
- // private static final String DEFAULT_STRUCTURE1 = "((((....))))";
- // private static final String DEFAULT_STRUCTURE2 =
- // "((((..(((....)))..))))";
-
- private VARNAPanel _vpMaster;
-
- private InfoPanel _infos = new InfoPanel();
- private JPanel _tools = new JPanel();
- private JPanel _input = new JPanel();
-
- private JPanel _seqPanel = new JPanel();
- private JPanel _structPanel = new JPanel();
- private JLabel _actions = new JLabel();
- private JLabel _struct = new JLabel(DEFAULT_STRUCTURE);
- private JComboBox _seq1 = new JComboBox();
- private JLabel _structLabel = new JLabel("Structure Secondaire");
- private JLabel _seqLabel = new JLabel("Sequence d'ARN");
- private JButton _goButton = new JButton("Repliement");
- private JButton _switchButton = new JButton("Effacer");
-
-
- private Color _backgroundColor = Color.white;
-
- public static Font textFieldsFont = Font.decode("MonoSpaced-BOLD-16");
- public static Font labelsFont = Font.decode("SansSerif-BOLD-20");
- public static final int marginTools = 250;
- public static String APP_TITLE = "Fête de la science 2015 - Inria AMIB - Repliement d'ARN";
-
-
- public static ModelBaseStyle createStyle(String txt)
- {
- ModelBaseStyle result = new ModelBaseStyle();
- try {
- result.assignParameters(txt);
- } catch (ExceptionModeleStyleBaseSyntaxError e) {
- // TODO Auto-generated catch block
- e.printStackTrace();
- } catch (ExceptionParameterError e) {
- // TODO Auto-generated catch block
- e.printStackTrace();
- }
- return result;
- }
-
- public void applyTo(VARNAPanel vp, ModelBaseStyle mb, int[] indices)
- {
- for(int i=0;i<indices.length;i++)
- {
- ModeleBase m = vp.getRNA().getBaseAt(indices[i]);
- m.setStyleBase(mb);
- if (m.getElementStructure()!=-1)
- {
- vp.getRNA().getBaseAt(m.getElementStructure()).setStyleBase(mb);
- }
- }
- vp.repaint();
- }
-
-
- public NussinovDemo() {
- super();
- try {
- _vpMaster = new VARNAPanel(getSeq(), "");
- } catch (ExceptionNonEqualLength e) {
- _vpMaster.errorDialog(e);
- }
- _vpMaster.setPreferredSize(new Dimension(600, 600));
- RNAPanelDemoInit();
- }
-
- public static void formatLabel(JLabel j)
- {
- j.setHorizontalTextPosition(JLabel.LEFT);
- j.setPreferredSize(new Dimension(marginTools, 15));
- j.setFont(labelsFont);
- }
-
- private void RNAPanelDemoInit() {
-
-
-
- _seq1.setFont(textFieldsFont);
- String[] seqs = {SEQUENCE_DUMMY,SEQUENCE_INRIA,SEQUENCE_A,SEQUENCE_B,SEQUENCE_C,SEQUENCE_BIG};
- _seq1.setModel(new DefaultComboBoxModel(seqs));
- _seq1.setEditable(true);
-
-
- setBackground(_backgroundColor);
- _vpMaster.setBackground(_backgroundColor);
- _vpMaster.addVARNAListener(this);
- _vpMaster.setFlatExteriorLoop(true);
-
-
-
- formatLabel(_seqLabel);
- formatLabel(_structLabel);
-
- _goButton.addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- showSolution();
- onStructureRedrawn();
- }
- });
-
- _switchButton.addActionListener(new ActionListener() {
- public void actionPerformed(ActionEvent e) {
- try {
- RNA r = new RNA();
- r.setRNA("", "");
- _struct.setText("");
- _vpMaster.setTitle("");
- _vpMaster.showRNA(r);
- onStructureRedrawn();
- }
- catch (ExceptionFileFormatOrSyntax e2) {
- e2.printStackTrace();
- } catch (ExceptionUnmatchedClosingParentheses e2) {
- // TODO Auto-generated catch block
- e2.printStackTrace();
- }
- _vpMaster.repaint();
- }
- });
-
- _seqPanel.setLayout(new BorderLayout());
- _seqPanel.add(_seqLabel, BorderLayout.WEST);
- _seqPanel.add(_seq1, BorderLayout.CENTER);
-
- _structLabel.setPreferredSize(new Dimension(marginTools, 15));
- _structLabel.setHorizontalTextPosition(JLabel.LEFT);
- _struct.setFont(textFieldsFont);
- _structPanel.setLayout(new BorderLayout());
- _structPanel.add(_structLabel, BorderLayout.WEST);
- _structPanel.add(_struct, BorderLayout.CENTER);
-
- _input.setLayout(new GridLayout(0, 1));
- _input.add(_seqPanel);
- _input.add(_structPanel);
-
- JPanel goPanel = new JPanel();
- goPanel.setLayout(new BorderLayout());
-
- _infos.setFont(labelsFont);
-
-
- _tools.setLayout(new BorderLayout());
- _tools.add(_infos, BorderLayout.SOUTH);
- _tools.add(_input, BorderLayout.CENTER);
- _tools.add(_actions, BorderLayout.NORTH);
- _tools.add(goPanel, BorderLayout.EAST);
- _tools.setBorder(BorderFactory.createEmptyBorder(5, 5, 5, 5));
-
- goPanel.add(_goButton, BorderLayout.CENTER);
- goPanel.add(_switchButton, BorderLayout.SOUTH);
-
- getContentPane().setLayout(new BorderLayout());
- JPanel VARNAs = new JPanel();
- VARNAs.setLayout(new GridLayout(1,2));
- VARNAs.add(_vpMaster);
- VARNAs.setBorder(BorderFactory.createBevelBorder(BevelBorder.RAISED));
- getContentPane().add(VARNAs, BorderLayout.CENTER);
- getContentPane().add(_tools, BorderLayout.SOUTH);
-
- setVisible(true);
-
- _vpMaster.getVARNAUI().UIRadiate();
- _vpMaster.setTitleFontSize(26f);
- _vpMaster.setTitleFontStyle(Font.PLAIN);
- _vpMaster.addVARNABasesListener(this);
- _vpMaster.setBackground(Color.decode("#308099"));
- _vpMaster.setModifiable(false);
- _vpMaster.setTitle("Repliement cible");
- _vpMaster.setBPStyle(BP_STYLE.SIMPLE);
- _vpMaster.setBackboneColor(Color.white);
- _vpMaster.setDefaultBPColor(Color.white);
- _vpMaster.setBaseNumbersColor(Color.white);
- _vpMaster.setBaseOutlineColor(Color.white);
- _vpMaster.setTitleColor(Color.white);
- _vpMaster.setTitleFontSize(26f);
-
-
-
- this.setTitle(APP_TITLE);
-
- showSolution();
- onStructureRedrawn();
- }
-
- private synchronized void showSolution()
- {
- ArrayList<String> sols = getStructs();
- _infos.setInfo(sols, count(getSeq()));
- }
-
-
-
-
- public String getSeq()
- {
- return (""+_seq1.getSelectedItem()).toUpperCase();
- }
-
-
- private boolean canBasePairAll(char a, char b)
- {
- return true;
- }
-
- private boolean canBasePairBasic(char a, char b)
- {
- if ((a=='G')&&(b=='C'))
- return true;
- if ((a=='C')&&(b=='G'))
- return true;
- if ((a=='U')&&(b=='A'))
- return true;
- if ((a=='A')&&(b=='U'))
- return true;
- if ((a=='G')&&(b=='U'))
- return true;
- if ((a=='U')&&(b=='G'))
- return true;
- return false;
- }
-
- private double basePairScoreBasic(char a, char b)
- {
- if ((a=='G')&&(b=='C'))
- return 1.0;
- if ((a=='C')&&(b=='G'))
- return 1.0;
- if ((a=='U')&&(b=='A'))
- return 1.0;
- if ((a=='A')&&(b=='U'))
- return 1.0;
- if ((a=='G')&&(b=='U'))
- return 1.0;
- if ((a=='U')&&(b=='G'))
- return 1.0;
- return Double.NEGATIVE_INFINITY;
- }
-
-
- private boolean canBasePairNussinov(char a, char b)
- {
- if ((a=='G')&&(b=='C'))
- return true;
- if ((a=='C')&&(b=='G'))
- return true;
- if ((a=='U')&&(b=='A'))
- return true;
- if ((a=='A')&&(b=='U'))
- return true;
- if ((a=='U')&&(b=='G'))
- return true;
- if ((a=='G')&&(b=='U'))
- return true;
- return false;
- }
-
- private double basePairScoreNussinov(char a, char b)
- {
- if ((a=='G')&&(b=='C'))
- return 3.0;
- if ((a=='C')&&(b=='G'))
- return 3.0;
- if ((a=='U')&&(b=='A'))
- return 2.0;
- if ((a=='A')&&(b=='U'))
- return 2.0;
- if ((a=='U')&&(b=='G'))
- return 1.0;
- if ((a=='G')&&(b=='U'))
- return 1.0;
- return Double.NEGATIVE_INFINITY;
- }
-
- private boolean canBasePairINRIA(char a, char b)
- {
- if ((a=='U')&&(b=='A'))
- return true;
- if ((a=='A')&&(b=='U'))
- return true;
- if ((a=='G')&&(b=='C'))
- return true;
- if ((a=='C')&&(b=='G'))
- return true;
-
- if ((a=='A')&&(b=='G'))
- return true;
- if ((a=='G')&&(b=='A'))
- return true;
- if ((a=='U')&&(b=='C'))
- return true;
- if ((a=='C')&&(b=='U'))
- return true;
- if ((a=='A')&&(b=='A'))
- return true;
- if ((a=='U')&&(b=='U'))
- return true;
-
- if ((a=='U')&&(b=='G'))
- return true;
- if ((a=='G')&&(b=='U'))
- return true;
- if ((a=='A')&&(b=='C'))
- return true;
- if ((a=='C')&&(b=='A'))
- return true;
- return false;
- }
-
- private double basePairScoreINRIA(char a, char b)
- {
- if ((a=='U')&&(b=='A'))
- return 3;
- if ((a=='A')&&(b=='U'))
- return 3;
- if ((a=='G')&&(b=='C'))
- return 3;
- if ((a=='C')&&(b=='G'))
- return 3;
-
- if ((a=='A')&&(b=='G'))
- return 2;
- if ((a=='G')&&(b=='A'))
- return 2;
- if ((a=='U')&&(b=='C'))
- return 2;
- if ((a=='C')&&(b=='U'))
- return 2;
- if ((a=='A')&&(b=='A'))
- return 2;
- if ((a=='U')&&(b=='U'))
- return 2;
-
- if ((a=='U')&&(b=='G'))
- return 1;
- if ((a=='G')&&(b=='U'))
- return 1;
- if ((a=='A')&&(b=='C'))
- return 1;
- if ((a=='C')&&(b=='A'))
- return 1;
- return Double.NEGATIVE_INFINITY;
- }
-
- private boolean canBasePair(char a, char b)
- {
- return canBasePairBasic(a,b);
- //return canBasePairNussinov(a,b);
- //return canBasePairINRIA(a,b);
- }
-
- private double basePairScore(char a, char b)
- {
- return basePairScoreBasic(a,b);
- //return basePairScoreNussinov(a,b);
- //return basePairScoreINRIA(a,b);
- }
-
- public double[][] fillMatrix(String seq)
- {
- int n = seq.length();
- double[][] tab = new double[n][n];
- for(int m=1;m<=n;m++)
- {
- for(int i=0;i<n-m+1;i++)
- {
- int j = i+m-1;
- tab[i][j] = 0;
- if (i<j)
- {
- tab[i][j] = Math.max(tab[i][j], tab[i+1][j]);
- for (int k=i+1;k<=j;k++)
- {
- if (canBasePair(seq.charAt(i),seq.charAt(k)))
- {
- double fact1 = 0;
- if (k>i+1)
- {
- fact1 = tab[i+1][k-1];
- }
- double fact2 = 0;
- if (k<j)
- {
- fact2 = tab[k+1][j];
- }
- tab[i][j] = Math.max(tab[i][j],basePairScore(seq.charAt(i),seq.charAt(k))+fact1+fact2);
- }
- }
- }
- }
- }
- return tab;
- }
-
- public static ArrayList<Double> combine(double bonus, ArrayList<Double> part1, ArrayList<Double> part2)
- {
- ArrayList<Double> base = new ArrayList<Double>();
- for(double d1: part1)
- {
- for(double d2: part2)
- {
- base.add(bonus+d1+d2);
- }
- }
- return base;
- }
-
- public static ArrayList<Double> selectBests(ArrayList<Double> base)
- {
- ArrayList<Double> result = new ArrayList<Double>();
- double best = Double.NEGATIVE_INFINITY;
- for(double val: base)
- {
- best = Math.max(val, best);
- }
- for(double val: base)
- {
- if (val == best)
- result.add(val);
- }
- return result;
- }
-
-
- private ArrayList<String> backtrack(double[][] tab, String seq)
- {
- return backtrack(tab,seq, 0, seq.length()-1);
- }
-
- private ArrayList<String> backtrack(double[][] tab, String seq, int i, int j)
- {
- ArrayList<String> result = new ArrayList<String>();
- if (i<j)
- {
- ArrayList<Integer> indices = new ArrayList<Integer>();
- indices.add(-1);
- for (int k=i+1;k<=j;k++)
- {
- indices.add(k);
- }
- for (int k : indices)
- {
- if (k==-1)
- {
- if (tab[i][j] == tab[i+1][j])
- {
- for (String s:backtrack(tab, seq, i+1,j))
- {
- result.add("."+s);
- }
- }
- }
- else
- {
- if (canBasePair(seq.charAt(i),seq.charAt(k)))
- {
- double fact1 = 0;
- if (k>i+1)
- {
- fact1 = tab[i+1][k-1];
- }
- double fact2 = 0;
- if (k<j)
- {
- fact2 = tab[k+1][j];
- }
- if (tab[i][j]==basePairScore(seq.charAt(i),seq.charAt(k))+fact1+fact2)
- {
- for (String s1:backtrack(tab, seq, i+1,k-1))
- {
- for (String s2:backtrack(tab, seq, k+1,j))
- {
- result.add("("+s1+")"+s2);
- }
- }
- }
- }
- }
- }
- }
- else if (i==j)
- {
- result.add(".");
- }
- else
- {
- result.add("");
- }
- return result;
- }
-
- public BigInteger count(String seq)
- {
- int n = seq.length();
-
- BigInteger[][] tab = new BigInteger[n][n];
- for(int m=1;m<=n;m++)
- {
- for(int i=0;i<n-m+1;i++)
- {
- int j = i+m-1;
- tab[i][j] = BigInteger.ZERO;
- if (i<j)
- {
- tab[i][j] = tab[i][j].add(tab[i+1][j]);
- for (int k=i+1;k<=j;k++)
- {
- if (canBasePair(seq.charAt(i),seq.charAt(k)))
- {
- BigInteger fact1 = BigInteger.ONE;
- if (k>i+1)
- {
- fact1 = tab[i+1][k-1];
- }
- BigInteger fact2 = BigInteger.ONE;
- if (k<j)
- {
- fact2 = tab[k+1][j];
- }
- tab[i][j] = tab[i][j].add(fact1.multiply(fact2));
- }
- }
- }
- else
- {
- tab[i][j] = BigInteger.ONE;
- }
- }
- }
- return tab[0][n-1];
- }
-
- private String _cache = "";
- ArrayList<String> _cacheStructs = new ArrayList<String>();
-
- public ArrayList<String> getStructs() {
- String seq = getSeq();
- seq = seq.toUpperCase();
- if (!_cache.equals(seq))
- {
- double[][] mfe = fillMatrix(seq);
- _cacheStructs = backtrack(mfe,seq);
- _cache = seq;
- }
- return _cacheStructs;
- }
-
- public VARNAPanel get_varnaPanel() {
- return _vpMaster;
- }
-
- public void set_varnaPanel(VARNAPanel surface) {
- _vpMaster = surface;
- }
-
-
- public JLabel get_info() {
- return _actions;
- }
-
- public void set_info(JLabel _info) {
- this._actions = _info;
- }
-
- public static void main(String[] args) {
- NussinovDemo d = new NussinovDemo();
- d.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
- d.pack();
- d.setVisible(true);
- }
-
- public void onStructureRedrawn() {
- _vpMaster.repaint();
- }
-
- public void onWarningEmitted(String s) {
- // TODO Auto-generated method stub
-
- }
-
- public void onLoad(String path) {
- // TODO Auto-generated method stub
-
- }
-
- public void onLoaded() {
- // TODO Auto-generated method stub
-
- }
-
- public void onUINewStructure(VARNAConfig v, RNA r) {
- // TODO Auto-generated method stub
-
- }
-
- static final String[] _bases = {"A","C","G","U"};
- static final String[] _basesComp = {"U","G","C","A"};
-
- public void onBaseClicked(ModeleBase mb, MouseEvent e) {
- }
-
- public void onZoomLevelChanged() {
- // TODO Auto-generated method stub
-
- }
-
- public void onTranslationChanged() {
- // TODO Auto-generated method stub
-
- }
- private class InfoPanel extends JPanel
- {
- ArrayList<String> _sols = new ArrayList<String>();
- BigInteger _nbFolds = BigInteger.ZERO;
- JTextArea _text = new JTextArea("");
- JTextArea _subopts = new JTextArea("");
- JPanel _suboptBrowser = new JPanel();
- JPanel _suboptCount = new JPanel();
- int _selectedIndex = 0;
- JButton next = new JButton(">");
- JButton previous = new JButton("<");
-
- InfoPanel()
- {
- setLayout(new BorderLayout());
- add(_suboptBrowser,BorderLayout.SOUTH);
- add(_suboptCount,BorderLayout.NORTH);
-
- next.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent arg0) {
- if (_sols.size()>0)
- {
- setSelectedIndex((_selectedIndex+1)%_sols.size());
- }
- }
- });
-
- previous.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent arg0) {
- if (_sols.size()>0)
- {
- setSelectedIndex((_selectedIndex+_sols.size()-1)%_sols.size());
- }
- }
- });
- next.setEnabled(false);
- previous.setEnabled(false);
-
-
- JLabel nbLab = new JLabel("#Repliements");
- NussinovDemo.formatLabel(nbLab);
-
- _suboptCount.setLayout(new BorderLayout());
- _suboptCount.add(nbLab,BorderLayout.WEST);
- _suboptCount.add(_text,BorderLayout.CENTER);
-
- JLabel cooptlab = new JLabel("#Co-optimaux");
- NussinovDemo.formatLabel(cooptlab);
-
- JPanel commands = new JPanel();
- commands.add(previous);
- commands.add(next);
-
- JPanel jp = new JPanel();
- jp.setLayout(new BorderLayout());
- jp.add(_subopts,BorderLayout.WEST);
- jp.add(commands,BorderLayout.CENTER);
-
- _suboptBrowser.setLayout(new BorderLayout());
- _suboptBrowser.add(cooptlab,BorderLayout.WEST);
- _suboptBrowser.add(jp,BorderLayout.CENTER);
-
-
- }
-
-
- public void setSelectedIndex(int i)
- {
- _selectedIndex = i;
- RNA rfolded = new RNA();
- try {
- rfolded.setRNA(getSeq(), _sols.get(i));
- rfolded.drawRNARadiate(_vpMaster.getConfig());
- rfolded.setBaseNameColor(Color.white);
- rfolded.setBaseOutlineColor(Color.white);
- rfolded.setBaseNumbersColor(Color.white);
- _vpMaster.setBaseNumbersColor(Color.white);
- _vpMaster.setBaseOutlineColor(Color.white);
- _vpMaster.setFillBases(false);
- _vpMaster.setBaseNameColor(Color.white);
- _vpMaster.showRNAInterpolated(rfolded);
-
- } catch (ExceptionUnmatchedClosingParentheses e) {
- // TODO Auto-generated catch block
- e.printStackTrace();
- } catch (ExceptionFileFormatOrSyntax e) {
- // TODO Auto-generated catch block
- e.printStackTrace();
- }
- _struct.setText(_sols.get(i));
- formatDescription();
- }
-
- public void setFont(Font f)
- {
- super.setFont(f);
- if(_text!=null)
- {
- _text.setFont(f);
- _text.setOpaque(false);
- }
- if(_subopts!=null)
- {
- _subopts.setFont(f);
- _subopts.setOpaque(false);
- }
- }
- public void setInfo(ArrayList<String> sols, BigInteger nbFolds)
- {
- _sols = sols;
- _nbFolds = nbFolds;
- formatDescription();
- setSelectedIndex(0);
- }
-
- private void formatDescription()
- {
- _text.setText(""+_nbFolds);
- _subopts.setText(""+_sols.size());
- next.setEnabled(_sols.size()>1);
- previous.setEnabled(_sols.size()>1);
-
- }
-
- }
-
-}
git://source.jalview.org / jalview.git / blobdiff