+++ /dev/null
-/*
- VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases.
- Copyright (C) 2008 Kevin Darty, Alain Denise and Yann Ponty.
- electronic mail : Yann.Ponty@lri.fr
- paper mail : LRI, bat 490 Université Paris-Sud 91405 Orsay Cedex France
-
- This file is part of VARNA version 3.1.
- VARNA version 3.1 is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
-
- VARNA version 3.1 is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
- without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
- See the GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License along with VARNA version 3.1.
- If not, see http://www.gnu.org/licenses.
- */
-package fr.orsay.lri.varna.controlers;
-
-import java.awt.Component;
-import java.awt.Point;
-import java.awt.Rectangle;
-import java.awt.event.MouseEvent;
-import java.awt.event.MouseListener;
-import java.awt.event.MouseMotionListener;
-import java.awt.geom.Point2D;
-import java.util.ArrayList;
-import java.util.Collection;
-import java.util.Vector;
-
-import javax.swing.JMenu;
-import javax.swing.JMenuItem;
-import javax.swing.event.PopupMenuEvent;
-import javax.swing.event.PopupMenuListener;
-
-import fr.orsay.lri.varna.VARNAPanel;
-import fr.orsay.lri.varna.exceptions.ExceptionNAViewAlgorithm;
-import fr.orsay.lri.varna.models.annotations.TextAnnotation;
-import fr.orsay.lri.varna.models.rna.ModeleBase;
-import fr.orsay.lri.varna.models.rna.ModeleBaseNucleotide;
-import fr.orsay.lri.varna.models.rna.ModeleBasesComparison;
-import fr.orsay.lri.varna.models.rna.ModeleBP;
-import fr.orsay.lri.varna.models.rna.RNA;
-
-
-/**
- * Controller of the mouse click
- *
- * @author darty
- *
- */
-public class ControleurClicMovement implements MouseListener,
- MouseMotionListener, PopupMenuListener {
- private VARNAPanel _vp;
- private boolean _presenceMenuSelection;
- private JMenu _submenuSelection;
- public Point _spawnPoint;
- public Point _initialPoint;
- public Point _prevPoint;
- public Point _currentPoint;
-
- public static final double MIN_SELECTION_DISTANCE = 40.0;
- public static final double HYSTERESIS_DISTANCE = 10.0;
-
- private ModeleBase _selectedBase = null;
-
-
- public enum MouseStates {
- NONE,
- MOVE_ELEMENT,
- MOVE_OR_SELECT_ELEMENT,
- SELECT_ELEMENT,
- SELECT_REGION_OR_UNSELECT,
- SELECT_REGION,
- CREATE_BP,
- POPUP_MENU,
- MOVE_ANNOTATION,
- };
- private MouseStates _currentState = MouseStates.NONE;
-
-
-
- public ControleurClicMovement(VARNAPanel _vuep) {
- _vp = _vuep;
- _vp.getPopup().addPopupMenuListener(this);
- _presenceMenuSelection = false;
- }
-
- public void mouseClicked(MouseEvent arg0) {
- }
-
- public void mouseEntered(MouseEvent arg0) {
- }
-
- public void mouseExited(MouseEvent arg0) {
- }
-
- public void mousePressed(MouseEvent arg0)
- {
- _vp.requestFocus();
- boolean button1 = (arg0.getButton() == MouseEvent.BUTTON1);
- boolean button2 = (arg0.getButton() == MouseEvent.BUTTON2);
- boolean button3 = (arg0.getButton() == MouseEvent.BUTTON3);
- boolean shift = arg0.isShiftDown();
- boolean ctrl = arg0.isControlDown();
- boolean alt = arg0.isAltDown();
- _vp.removeSelectedAnnotation();
- if (button1 && !ctrl && !alt && !shift)
- {
- if (_vp.isModifiable())
- {
- _currentState = MouseStates.MOVE_OR_SELECT_ELEMENT;
- if (_vp.getRealCoords() != null
- && _vp.getRealCoords().length != 0
- && _vp.getRNA().get_listeBases().size() != 0)
- {
- _selectedBase = _vp.getNearestBase(arg0.getX(),arg0.getY(),false,false);
- TextAnnotation selectedAnnotation = _vp.getNearestAnnotation(arg0.getX(), arg0.getY());
- _initialPoint = new Point(arg0.getX(),arg0.getY());
- _currentPoint = new Point(_initialPoint);
- _prevPoint = new Point(_initialPoint);
- if (_selectedBase != null)
- {
- if (_vp.getRNA().get_drawMode() == RNA.DRAW_MODE_RADIATE)
- {
- _vp.highlightSelectedBase(_selectedBase);
- } else {
- if (!_vp.getSelectionIndices().contains(_selectedBase.getIndex()))
- {
- _vp.highlightSelectedBase(_selectedBase);
- }
- else
- {
- // Otherwise, keep current selection as it is and move it
- }
- }
- }
- else
- {
- if (selectedAnnotation != null)
- {
- _currentState = MouseStates.MOVE_ANNOTATION;
- _vp.set_selectedAnnotation(selectedAnnotation);
- _vp.highlightSelectedAnnotation();
- }
- else
- {
- _vp.clearSelection();
- _selectedBase = null;
- _currentState = MouseStates.SELECT_REGION_OR_UNSELECT;
- _initialPoint = new Point(arg0.getX(),arg0.getY());
- _prevPoint = new Point(_initialPoint);
- _currentPoint = new Point(_initialPoint);
- }
- }
- }
- }
- }
- else if (button1 && ctrl && !alt && !shift)
- {
- _selectedBase = _vp.getNearestBase(arg0.getX(),arg0.getY(),false,false);
- if (_selectedBase != null)
- {
- _vp.clearSelection();
- _currentState = MouseStates.CREATE_BP;
- _vp.highlightSelectedBase(_selectedBase);
- _vp.setOriginLink(_vp.logicToPanel(_selectedBase.getCoords()));
- _initialPoint = new Point(arg0.getX(),arg0.getY());
- _currentPoint = new Point(_initialPoint);
- }
- }
- else if (button1 && !ctrl && !alt && shift)
- {
- _currentState = MouseStates.SELECT_ELEMENT;
- _initialPoint = new Point(arg0.getX(),arg0.getY());
- _currentPoint = new Point(_initialPoint);
- }
- else if (button3)
- {
- _currentState = MouseStates.POPUP_MENU;
- if (_presenceMenuSelection) {
- _vp.getPopupMenu().removeSelectionMenu();
- }
- if ((_vp.getRealCoords() != null) && _vp.getRNA().get_listeBases().size() != 0) {
- updateNearestBase(arg0);
- // on insere dans le menu les nouvelles options
- addMenu(arg0);
- if (_vp.get_selectedAnnotation() != null)
- _vp.highlightSelectedAnnotation();
- }
- // affichage du popup menu
- if (_vp.getRNA().get_drawMode() == RNA.DRAW_MODE_LINEAR) {
- _vp.getPopup().get_rotation().setEnabled(false);
- } else {
- _vp.getPopup().get_rotation().setEnabled(true);
- }
- _vp.getPopup().updateDialog();
- _vp.getPopup().show(_vp, arg0.getX(), arg0.getY());
- }
- _vp.repaint();
- }
-
- public void mouseDragged(MouseEvent me) {
- if ((_currentState == MouseStates.MOVE_OR_SELECT_ELEMENT)||(_currentState == MouseStates.MOVE_ELEMENT))
- {
- _vp.lockScrolling();
-
- _currentState = MouseStates.MOVE_ELEMENT;
- // si on deplace la souris et qu'une base est selectionnée
- if (_selectedBase != null) {
- if (_vp.getRNA().get_drawMode() == RNA.DRAW_MODE_RADIATE) {
- _vp.highlightSelectedStem(_selectedBase);
- // dans le cas radiale on deplace une helice
- _vp.getVARNAUI().UIMoveHelixAtom(_selectedBase.getIndex(), _vp.panelToLogicPoint(new Point2D.Double(me.getX(), me.getY())));
- } else {
- // dans le cas circulaire naview ou line on deplace une base
- _currentPoint = new Point(me.getX(), me.getY());
- moveSelection(_prevPoint,_currentPoint);
- _prevPoint = new Point(_currentPoint);
- }
- _vp.repaint();
- }
- }
- else if (_currentState == MouseStates.MOVE_ANNOTATION)
- {
- if (_vp.get_selectedAnnotation()!=null)
- {
- Point2D.Double p = _vp.panelToLogicPoint(new Point2D.Double(me.getX(), me.getY()));
- _vp.get_selectedAnnotation().setAncrage(p.x,p.y);
- _vp.repaint();
- }
- }
- else if ((_currentState == MouseStates.SELECT_ELEMENT)||(_currentState == MouseStates.SELECT_REGION_OR_UNSELECT))
- {
- if (_initialPoint.distance(me.getX(),me.getY())>HYSTERESIS_DISTANCE)
- _currentState = MouseStates.SELECT_REGION;
- }
- else if (_currentState == MouseStates.SELECT_REGION)
- {
- _currentPoint = new Point(me.getX(),me.getY());
- int minx = Math.min(_currentPoint.x, _initialPoint.x);
- int miny = Math.min(_currentPoint.y, _initialPoint.y);
- int maxx = Math.max(_currentPoint.x, _initialPoint.x);
- int maxy = Math.max(_currentPoint.y, _initialPoint.y);
- _vp.setSelectionRectangle(new Rectangle(minx,miny,maxx-minx,maxy-miny));
- }
- else if (_currentState == MouseStates.CREATE_BP)
- {
- if (_initialPoint.distance(me.getX(),me.getY())>HYSTERESIS_DISTANCE)
- {
- ModeleBase newSelectedBase = _vp.getNearestBase(me.getX(),me.getY(),false,false);
- _vp.setHoverBase(newSelectedBase);
- if (newSelectedBase==null)
- {
- _vp.setDestinationLink(new Point2D.Double(me.getX(),me.getY()));
- _vp.clearSelection();
- _vp.addToSelection(_selectedBase.getIndex());
- }
- else
- {
- ModeleBase mborig = _selectedBase;
- _vp.clearSelection();
- _vp.addToSelection(newSelectedBase.getIndex());
- _vp.addToSelection(mborig.getIndex());
- _vp.setDestinationLink(_vp.logicToPanel(newSelectedBase.getCoords()));
- }
- _vp.repaint();
- }
-
- }
- }
-
-
- public void mouseReleased(MouseEvent arg0) {
- if (arg0.getButton() == MouseEvent.BUTTON1)
- {
- _vp.fireBaseClicked(_selectedBase, arg0);
- //System.out.println(""+_currentState);
-
- if (_currentState == MouseStates.MOVE_ELEMENT)
- {
- _vp.clearSelection();
- _selectedBase = null;
- _vp.unlockScrolling();
- _vp.removeSelectedAnnotation();
- }
- else if (_currentState == MouseStates.SELECT_REGION_OR_UNSELECT)
- {
- _vp.clearSelection();
- _selectedBase = null;
- _vp.removeSelectedAnnotation();
- }
- else if (_currentState == MouseStates.SELECT_ELEMENT)
- {
- if (_vp.getRealCoords() != null
- && _vp.getRealCoords().length != 0
- && _vp.getRNA().get_listeBases().size() != 0)
- {
- int selectedIndex = _vp.getNearestBaseIndex(arg0.getX(),arg0.getY(),false,false);
- if (selectedIndex !=-1)
- {
- _vp.toggleSelection(selectedIndex);
- }
- }
- _selectedBase = null;
- }
- else if (_currentState == MouseStates.SELECT_REGION)
- {
- _vp.removeSelectionRectangle();
- }
- else if (_currentState == MouseStates.CREATE_BP)
- {
- if (_initialPoint.distance(arg0.getX(),arg0.getY())>HYSTERESIS_DISTANCE)
- {
- int selectedIndex = _vp.getNearestBaseIndex(arg0.getX(),arg0.getY(),false,false);
- if (selectedIndex>=0)
- {
- ModeleBase mb = _vp.getNearestBase(arg0.getX(),arg0.getY(),false,false);
- ModeleBase mborig = _selectedBase;
- ModeleBP msbp = new ModeleBP(mb,mborig);
- if (mb!=mborig)
- {
- _vp.getVARNAUI().UIAddBP(mb.getIndex(),mborig.getIndex(),msbp);
- }
- }
- }
- _vp.removeLink();
- _vp.clearSelection();
- _vp.repaint();
- }
- else
- {
- _vp.clearSelection();
- }
-
- }
- _currentState = MouseStates.NONE;
- _vp.repaint();
- }
-
-
- private void addMenu(MouseEvent arg0) {
- // creation du menu
- _submenuSelection = new JMenu("Selection");
- addCurrent();
- // ajout des option sur base
- addMenuBase();
- // ajout des option sur paire de base
- if (_vp.getRNA().get_listeBases().get(_vp.getNearestBase())
- .getElementStructure() != -1) {
- addMenuBasePair();
- }
-
- // detection renflement
- detectBulge();
- // detection 3'
- detect3Prime();
- // detection 5'
- detect5Prime();
- // detection boucle
- detectLoop();
- // detection d'helice
- detectHelix();
- // detection tige
- detectStem();
- // Ajout de toutes bases
- addAllBase();
- // detection d'annotation
- detectAnnotation(arg0);
-
- _vp.getPopup().addSelectionMenu(_submenuSelection);
- _presenceMenuSelection = true;
- }
-
- private void detectAnnotation(MouseEvent arg0) {
- if (_vp.getListeAnnotations().size() != 0) {
- double dist = Double.MAX_VALUE;
- double d2;
- Point2D.Double position;
- for (TextAnnotation textAnnot : _vp.getListeAnnotations()) {
- // calcul de la distance
- position = textAnnot.getCenterPosition();
- position = _vp.transformCoord(position);
- d2 = Math.sqrt(Math.pow((position.x - arg0.getX()), 2)
- + Math.pow((position.y - arg0.getY()), 2));
- // si la valeur est inferieur au minimum actuel
- if (dist > d2) {
- _vp.set_selectedAnnotation(textAnnot);
- dist = d2;
- }
- }
- _submenuSelection.addSeparator();
- _vp.getPopup().addAnnotationMenu(_submenuSelection,true);
- }
- }
-
- private void detectBulge() {
- int indiceB = _vp.getNearestBase();
- ArrayList<Integer> indices = _vp.getRNA().findBulge(indiceB);
- if ((indices.size() > 0)
- && (_vp.getRNA().getHelixCountOnLoop(_vp.getNearestBase()) == 2)) {
- JMenu submenuBulge = new JMenu("Bulge");
- submenuBulge.addChangeListener(new ControleurSelectionHighlight(
- new Vector<Integer>(indices), _vp, submenuBulge));
- submenuBulge.setActionCommand("bulge");
- if (!_vp.isModifiable())
- submenuBulge.setEnabled(false);
- _vp.getPopupMenu().addColorOptions(submenuBulge);
- _submenuSelection.add(submenuBulge);
- }
- }
-
- private void detectHelix() {
- int indiceH = _vp.getNearestBase();
- ArrayList<Integer> indices = _vp.getRNA().findHelix(indiceH);
- if (indices.size() != 0) {
- // ajout menu helice
- JMenu submenuHelix = new JMenu("Helix");
- submenuHelix.addChangeListener(new ControleurSelectionHighlight(
- new Vector<Integer>(indices), _vp, submenuHelix));
- submenuHelix.setActionCommand("helix");
- if (!_vp.isModifiable())
- submenuHelix.setEnabled(false);
- _vp.getPopupMenu().addColorOptions(submenuHelix);
- submenuHelix.addSeparator();
- _vp.getPopupMenu().addAnnotationMenu(submenuHelix);
- _submenuSelection.add(submenuHelix);
- }
- }
-
- private void detectStem() {
- int indiceS = _vp.getNearestBase();
- ArrayList<Integer> indices = _vp.getRNA().findStem(indiceS);
- if (indices.size() > 0) {
- JMenu submenuStem = new JMenu("Stem");
- submenuStem.addChangeListener(new ControleurSelectionHighlight(
- new Vector<Integer>(indices), _vp, submenuStem));
- submenuStem.setActionCommand("stem");
- if (!_vp.isModifiable())
- submenuStem.setEnabled(false);
- _vp.getPopupMenu().addColorOptions(submenuStem);
- _submenuSelection.add(submenuStem);
- }
- }
-
- private void detect3Prime() {
- // detection 3'
- int indice3 = _vp.getNearestBase();
- ArrayList<Integer> indices = _vp.getRNA().find3Prime(indice3);
- if (indices.size() != 0) {
- JMenu submenu3Prime = new JMenu("3'");
- submenu3Prime.addChangeListener(new ControleurSelectionHighlight(
- new Vector<Integer>(indices), _vp, submenu3Prime));
- submenu3Prime.setActionCommand("3'");
- if (!_vp.isModifiable())
- submenu3Prime.setEnabled(false);
- _vp.getPopupMenu().addColorOptions(submenu3Prime);
- _submenuSelection.add(submenu3Prime);
- }
- }
-
- private void detect5Prime() {
- int indice5 = _vp.getNearestBase();
- ArrayList<Integer> indices = _vp.getRNA().find5Prime(indice5);
- if (indices.size() != 0) {
- JMenu submenu5Prime = new JMenu("5'");
- submenu5Prime.addChangeListener(new ControleurSelectionHighlight(
- new Vector<Integer>(indices), _vp, submenu5Prime));
- submenu5Prime.setActionCommand("5'");
- if (!_vp.isModifiable())
- submenu5Prime.setEnabled(false);
- _vp.getPopupMenu().addColorOptions(submenu5Prime);
- _submenuSelection.add(submenu5Prime);
- }
- }
-
- private void detectLoop() {
- int indexL = _vp.getNearestBase();
- if (_vp.getRNA().get_listeBases().get(indexL).getElementStructure() == -1) {
- ArrayList<Integer> listLoop = _vp.getRNA().findLoop(indexL);
- JMenu submenuLoop = new JMenu("Loop");
- submenuLoop.addChangeListener(new ControleurSelectionHighlight(
- listLoop, _vp, submenuLoop));
- submenuLoop.setActionCommand("loop1");
- if (!_vp.isModifiable())
- submenuLoop.setEnabled(false);
- _vp.getPopupMenu().addColorOptions(submenuLoop);
- submenuLoop.addSeparator();
- _vp.getPopupMenu().addAnnotationMenu(submenuLoop);
- _submenuSelection.add(submenuLoop);
- } else {
- ArrayList<Integer> listLoop1 = _vp.getRNA().findLoopForward(indexL);
- if (listLoop1.size() > 0) {
- JMenu submenuLoop1 = new JMenu("Forward loop");
- submenuLoop1
- .addChangeListener(new ControleurSelectionHighlight(
- listLoop1, _vp, submenuLoop1));
- submenuLoop1.setActionCommand("loop1");
- if (!_vp.isModifiable())
- submenuLoop1.setEnabled(false);
- _vp.getPopupMenu().addColorOptions(submenuLoop1);
- submenuLoop1.addSeparator();
- _vp.getPopupMenu().addAnnotationMenu(submenuLoop1);
- _submenuSelection.add(submenuLoop1);
- }
- ArrayList<Integer> listLoop2 = _vp.getRNA()
- .findLoopBackward(indexL);
- if (listLoop2.size() > 0) {
- JMenu submenuLoop2 = new JMenu("Backward loop");
- submenuLoop2
- .addChangeListener(new ControleurSelectionHighlight(
- listLoop2, _vp, submenuLoop2));
- submenuLoop2.setActionCommand("loop2");
- if (!_vp.isModifiable())
- submenuLoop2.setEnabled(false);
- _vp.getPopupMenu().addColorOptions(submenuLoop2);
- submenuLoop2.addSeparator();
- _vp.getPopupMenu().addAnnotationMenu(submenuLoop2);
- _submenuSelection.add(submenuLoop2);
- }
- }
- }
-
- private void addCurrent() {
- Collection<? extends ModeleBase> mbs = _vp.getSelection().getBases();
- if (mbs.size()>0)
- {
- JMenu submenuAll = new JMenu("Current");
- submenuAll.addChangeListener(new ControleurSelectionHighlight(
- mbs, _vp, submenuAll));
- submenuAll.setActionCommand("current");
- if (!_vp.isModifiable())
- submenuAll.setEnabled(false);
- _vp.getPopupMenu().addColorOptions(submenuAll);
- _submenuSelection.add(submenuAll);
- }
- }
-
-
- private void addMenuBase() {
- JMenu submenuBase = new JMenu();
- ModeleBase mb = _vp.getRNA().get_listeBases().get(_vp.getNearestBase());
- if (mb instanceof ModeleBasesComparison) {
- submenuBase.setText("Base #" + (mb.getBaseNumber()) + ":"
- + ((ModeleBasesComparison) mb).getBases());
- } else {
- submenuBase.setText("Base #" + (mb.getBaseNumber()) + ":"
- + ((ModeleBaseNucleotide) mb).getBase());
- }
- submenuBase.addChangeListener(new ControleurSelectionHighlight(mb
- .getIndex(), _vp, submenuBase));
- submenuBase.setActionCommand("base");
- // option disponible seulement en mode modifiable
- if (!_vp.isModifiable())
- submenuBase.setEnabled(false);
-
- JMenuItem baseChar = new JMenuItem("Edit base");
- baseChar.setActionCommand("baseChar");
- baseChar.addActionListener(_vp.getPopupMenu().get_controleurMenu());
- submenuBase.add(baseChar);
- _vp.getPopupMenu().addColorOptions(submenuBase);
- submenuBase.addSeparator();
- _vp.getPopupMenu().addAnnotationMenu(submenuBase);
- _submenuSelection.add(submenuBase);
- }
-
- private void addAllBase() {
- ArrayList<Integer> indices = _vp.getRNA().findAll();
- JMenu submenuAll = new JMenu("All");
- submenuAll.addChangeListener(new ControleurSelectionHighlight(
- new Vector<Integer>(indices), _vp, submenuAll));
- submenuAll.setActionCommand("all");
- if (!_vp.isModifiable())
- submenuAll.setEnabled(false);
- _vp.getPopupMenu().addColorOptions(submenuAll);
- _submenuSelection.add(submenuAll);
- }
-
- private void addMenuBasePair() {
- int indiceBP = _vp.getNearestBase();
- ArrayList<Integer> indices = _vp.getRNA().findPair(indiceBP);
- ModeleBase base = _vp.getRNA()
- .get_listeBases().get(_vp.getNearestBase());
- if (base.getElementStructure() != -1) {
- JMenu submenuBasePair = new JMenu();
- ModeleBase partner = _vp
- .getRNA().get_listeBases().get(
- base.getElementStructure());
- submenuBasePair
- .addChangeListener(new ControleurSelectionHighlight(
- indices, _vp, submenuBasePair));
- submenuBasePair.setText("Base pair #("
- + (Math.min(base.getBaseNumber(), partner
- .getBaseNumber()))
- + ","
- + (Math.max(base.getBaseNumber(), partner
- .getBaseNumber())) + ")");
- submenuBasePair.setActionCommand("bp");
- // option disponible seulement en mode modifiable
- if (!_vp.isModifiable())
- submenuBasePair.setEnabled(false);
-
- JMenuItem basepair = new JMenuItem("Edit BP");
- basepair.setActionCommand("basepair");
- basepair.addActionListener(_vp.getPopupMenu()
- .get_controleurMenu());
-
- _vp.getPopupMenu().addColorOptions(submenuBasePair);
- Component[] comps = submenuBasePair.getMenuComponents();
- int offset = -1;
- for (int i = 0; i < comps.length; i++) {
- Component c = comps[i];
- if (c instanceof JMenuItem) {
- JMenuItem jmi = (JMenuItem) c;
- if (jmi.getActionCommand().contains(",BPColor")) {
- offset = i;
- }
- }
- }
- if (offset != -1) {
- submenuBasePair.insert(basepair, offset);
- } else {
- submenuBasePair.add(basepair);
- }
- _submenuSelection.add(submenuBasePair);
- }
- }
-
- private void updateNearestBase(MouseEvent arg0) {
- int i = _vp.getNearestBaseIndex(arg0.getX(),arg0.getY(),true,false);
- if (i!=-1)
- _vp.setNearestBase(i);
- }
-
-
-
-
- public void mouseMoved(MouseEvent arg0) {
- _selectedBase = _vp.getNearestBase(arg0.getX(),arg0.getY());
- TextAnnotation selectedAnnotation = _vp.getNearestAnnotation(arg0.getX(),arg0.getY());
- _vp.setHoverBase(_selectedBase);
- if (_selectedBase != null)
- {
- }
- else if (selectedAnnotation!=null)
- {
- _vp.set_selectedAnnotation(selectedAnnotation);
- _vp.highlightSelectedAnnotation();
- _vp.repaint();
- }
- _vp.setLastSelectedPosition(new Point2D.Double(arg0.getX(),arg0.getY()));
- }
-
-
-
- private void moveSelection(Point prev, Point cur)
- {
- Point2D.Double p1 = _vp.panelToLogicPoint(new Point2D.Double(prev.x,prev.y));
- Point2D.Double p2 = _vp.panelToLogicPoint(new Point2D.Double(cur.x,cur.y));
- double dx = (p2.x - p1.x);
- double dy = (p2.y - p1.y);
-
- if (_vp.isModifiable())
- {
- double ndx = dx;
- double ndy = dy;
- if (_vp.getRNA().get_drawMode() == RNA.DRAW_MODE_LINEAR)
- {
- ndy=0.0;
- }
- _vp.getVARNAUI().UIShiftBaseCoord(_vp.getSelectionIndices(), ndx, ndy);
- _vp.fireLayoutChanged();
-
- }
- }
-
-
- public void popupMenuCanceled(PopupMenuEvent arg0) {
- }
-
- public void popupMenuWillBecomeInvisible(PopupMenuEvent arg0) {
- _vp.resetAnnotationHighlight();
- _selectedBase = null;
- }
-
- public void popupMenuWillBecomeVisible(PopupMenuEvent arg0) {
- }
-}
\ No newline at end of file
git://source.jalview.org / jalview.git / blobdiff