--- /dev/null
+/*
+ VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases.
+ Copyright (C) 2008 Kevin Darty, Alain Denise and Yann Ponty.
+ electronic mail : Yann.Ponty@lri.fr
+ paper mail : LRI, bat 490 Université Paris-Sud 91405 Orsay Cedex France
+
+ This file is part of VARNA version 3.1.
+ VARNA version 3.1 is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
+ as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+
+ VARNA version 3.1 is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
+ without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+ See the GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License along with VARNA version 3.1.
+ If not, see http://www.gnu.org/licenses.
+ */
+package fr.orsay.lri.varna.controlers;
+
+import java.awt.Color;
+import java.util.ArrayList;
+import java.util.Stack;
+
+import javax.swing.event.CaretEvent;
+import javax.swing.event.CaretListener;
+import javax.swing.text.BadLocationException;
+import javax.swing.text.DefaultHighlighter;
+import javax.swing.text.Highlighter;
+
+import fr.orsay.lri.varna.applications.VARNAOnlineDemo;
+import fr.orsay.lri.varna.exceptions.ExceptionNonEqualLength;
+
+/**
+ * It controls the sequence and structure text fields and changes their color if
+ * they have different lengths or unbalanced parentheses.
+ *
+ * @author darty
+ *
+ */
+public class ControleurDemoTextField implements CaretListener {
+ private VARNAOnlineDemo _vod;
+ private String _oldSeq, _oldStruct;
+ private Highlighter _hilit;
+ private Highlighter.HighlightPainter _painter;
+ private final Color COLORERROR = Color.RED;
+ private final Color COLORWARNING = Color.ORANGE;
+
+ public ControleurDemoTextField(VARNAOnlineDemo VOD) {
+ _vod = VOD;
+ _oldSeq = _vod.get_seq().getText();
+ _oldStruct = _vod.get_struct().getText();
+ _hilit = new DefaultHighlighter();
+ _painter = new DefaultHighlighter.DefaultHighlightPainter(Color.BLACK);
+ _vod.get_struct().setHighlighter(_hilit);
+ }
+
+ // if there is any change
+ public void caretUpdate(CaretEvent e) {
+ if (_oldStruct != _vod.get_struct().getText()
+ || _oldSeq != _vod.get_seq().getText()) {
+ ArrayList<String> infos = new ArrayList<String>();
+ _vod.get_info().removeAll();
+ _hilit.removeAllHighlights();
+ _oldStruct = _vod.get_struct().getText();
+ _oldSeq = _vod.get_seq().getText();
+ int nbPO = 0, nbPF = 0;
+ // compte les parentheses ouvrantes et fermantes
+ Stack<Integer> p = new Stack<Integer>();
+ boolean pb = false;
+ for (int i = 0; i < _vod.get_struct().getText().length(); i++) {
+ if (_vod.get_struct().getText().charAt(i) == '(') {
+ nbPO++;
+ p.push(i);
+ } else if (_vod.get_struct().getText().charAt(i) == ')') {
+ nbPF++;
+ if (p.size() == 0) {
+ try {
+ _hilit.addHighlight(i, i + 1, _painter);
+ } catch (BadLocationException e1) {
+ _vod.get_varnaPanel().errorDialog(e1);
+ }
+ pb = true;
+ } else
+ p.pop();
+ }
+ }
+
+ // si le nombre de parentheses ouvrantes/fermantes est different
+ if (pb || p.size() > 0) {
+ // colorie en rouge
+ if (pb) {
+ infos.add("too many closing parentheses");
+ }
+ if (p.size() > 0) {
+ int indice;
+ while (!p.isEmpty()) {
+ indice = p.pop();
+ try {
+ _hilit.addHighlight(indice, indice + 1, _painter);
+ } catch (BadLocationException e1) {
+ _vod.get_varnaPanel().errorDialog(e1);
+ }
+ }
+ infos.add("too many opening parentheses");
+ }
+ _vod.get_info().setForeground(COLORERROR);
+ _vod.get_seq().setForeground(COLORERROR);
+ _vod.get_struct().setForeground(COLORERROR);
+ } else {
+ try {
+ // redraw the new RNA
+ _vod.get_varnaPanel().drawRNA(_vod.get_seq().getText(),
+ _vod.get_struct().getText(),
+ _vod.get_varnaPanel().getRNA().get_drawMode());
+ } catch (ExceptionNonEqualLength e1) {
+ _vod.get_varnaPanel().errorDialog(e1);
+ }
+ // verifie la longueur de la structure et de la sequence
+ if (_vod.get_seq().getText().length() != _vod.get_struct()
+ .getText().length()) {
+ // colorie en orange
+ infos.add("different lenghts");
+ _vod.get_seq().setForeground(COLORWARNING);
+ _vod.get_struct().setForeground(COLORWARNING);
+ } else {
+ // sinon colorie en noir
+ _vod.get_seq().setForeground(Color.black);
+ _vod.get_struct().setForeground(Color.black);
+ }
+ }
+ _vod.get_varnaPanel().getVARNAUI().UIReset();
+ String info = new String();
+ if (infos.size() != 0) {
+ info += infos.get(0);
+ for (int i = 1; i < infos.size(); i++) {
+ info += ", " + infos.get(i);
+ }
+ info += ".";
+ }
+ _vod.get_info().setText(info);
+ }
+ }
+}
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git://source.jalview.org / jalview.git / blobdiff