JAL-3032 upgrade to Jmol 14.29.17; clearing of src2 directory
[jalview.git] / src2 / fr / orsay / lri / varna / models / export / SVGExport.java
diff --git a/src2/fr/orsay/lri/varna/models/export/SVGExport.java b/src2/fr/orsay/lri/varna/models/export/SVGExport.java
deleted file mode 100644 (file)
index 0ddd711..0000000
+++ /dev/null
@@ -1,197 +0,0 @@
-/*
- VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases.
- Copyright (C) 2008  Kevin Darty, Alain Denise and Yann Ponty.
- electronic mail : Yann.Ponty@lri.fr
- paper mail : LRI, bat 490 Université Paris-Sud 91405 Orsay Cedex France
-
- This file is part of VARNA version 3.1.
- VARNA version 3.1 is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
-
- VARNA version 3.1 is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
- without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
- See the GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License along with VARNA version 3.1.
- If not, see http://www.gnu.org/licenses.
- */
-package fr.orsay.lri.varna.models.export;
-
-import java.awt.Color;
-import java.awt.geom.Point2D;
-import java.awt.geom.Rectangle2D;
-import java.awt.geom.Point2D.Double;
-
-import fr.orsay.lri.varna.models.rna.ModeleBP;
-
-public class SVGExport extends SecStrDrawingProducer {
-
-       private double _fontsize = 10.0;
-       private Rectangle2D.Double _bb = new Rectangle2D.Double(0, 0, 10, 10);
-       double _thickness = 2.0;
-       
-       
-       public SVGExport()
-       {
-               super();
-               super.setScale(0.5);
-       }
-
-       private String getRGBString(Color col) {
-               int rpc = (int) ((((double) col.getRed()) / 255.0) * 100);
-               int gpc = (int) ((((double) col.getGreen()) / 255.0) * 100);
-               int bpc = (int) ((((double) col.getBlue()) / 255.0) * 100);
-               return "rgb(" + rpc + "%, " + gpc + "%, " + bpc + "%)";
-       }
-
-       public String drawCircleS(Point2D.Double base, double radius,
-                       double thickness) {
-               _thickness = thickness;
-               return "<circle cx=\"" + base.x + "\" cy=\"" + (_bb.height - base.y)
-                               + "\" r=\"" + radius + "\" stroke=\"" + getRGBString(_curColor)
-                               + "\" stroke-width=\"" + thickness + "\" fill=\"none\"/>\n";
-       }
-
-       public String drawLineS(Point2D.Double orig, Point2D.Double dest,
-                       double thickness) {
-               _thickness = thickness;
-               return "<line x1=\"" + orig.x + "\" y1=\"" + (_bb.height - orig.y)
-                               + "\" x2=\"" + dest.x + "\" y2=\"" + (_bb.height - dest.y)
-                               + "\" stroke=\"" + getRGBString(_curColor)
-                               + "\" stroke-width=\"" + thickness + "\" />\n";
-       }
-
-       public String drawRectangleS(Point2D.Double orig, Point2D.Double dims,
-                       double thickness) {
-               _thickness = thickness;
-               return "<rect x=\""+ orig.x+"\" y=\""+(_bb.height - orig.y - dims.y)+"\" width=\""+dims.x
-                 +"\" height=\""+dims.y+
-                 "\" fill=\"none\" style=\"stroke-width:"+thickness+";stroke:"+getRGBString(_curColor)+"\"/>";
-       }
-
-       public String drawTextS(Point2D.Double base, String txt) {
-               //System.out.println(txt);
-               return "<text x=\""
-                               + (base.x)
-                               + "\" y=\""
-                               + (_bb.height - base.y + 0.4 * _fontsize)
-                               + "\" text-anchor=\"middle\" font-family=\"Verdana\" font-size=\""
-                               + _fontsize + "\" fill=\"" + getRGBString(_curColor) + "\" >"
-                               + txt + "</text>\n";
-       }
-
-       public String fillCircleS(Point2D.Double base, double radius,
-                       double thickness, Color col) {
-               _thickness = thickness;
-
-               return "<circle cx=\"" + base.x + "\" cy=\"" + (_bb.height - base.y)
-                               + "\" r=\"" + radius + "\" stroke=\"none\" stroke-width=\""
-                               + thickness + "\" fill=\"" + getRGBString(col) + "\"/>\n";
-       }
-
-       public String footerS() {
-               return "</svg>\n";
-       }
-
-       public String headerS(Rectangle2D.Double bb) {
-               _bb = bb;
-               return "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n"
-                               + "<!DOCTYPE svg PUBLIC \"-//W3C//DTD SVG 1.1//EN\" \n"
-                               + "\"http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd\">\n"
-                               + "\n"
-                               + "<svg width=\"100%\" height=\"100%\" version=\"1.1\"\n"
-                               + "xmlns=\"http://www.w3.org/2000/svg\">\n";
-       }
-
-       public String setFontS(int font, double size) {
-               _fontsize = 0.5 * size;
-               return "";
-       }
-
-       
-       private Point2D.Double polarToCartesian(Point2D.Double center, double radiusX, double radiusY, double angleInDegrees) {
-                 double angleInRadians = (angleInDegrees) * Math.PI / 180.0;
-
-                 return new Point2D.Double(center.x + (radiusX * Math.cos(angleInRadians)),
-                                 _bb.height - (center.y + (radiusY * Math.sin(angleInRadians))));
-               }
-
-       
-       public String drawArcS(Point2D.Double o, double width, double height,
-                       double startAngle, double endAngle) {
-               double rx = width / 2.0;
-               double ry = height / 2.0;
-               
-               Point2D.Double ps = polarToCartesian(o,rx,ry,startAngle);
-               Point2D.Double pe = polarToCartesian(o,rx,ry,endAngle);
-               
-               String d = "<path d=\"M " + ps.x + "," +  ps.y + " A " + rx + "," + ry
-                               + " 0 1,1 " +  pe.x + "," + pe.y + "\" style=\"fill:none; stroke:"
-                               + getRGBString(_curColor) + "; stroke-width:" + _thickness
-                               + "\"/>\n";             
-               return d;
-       }
-
-       public String drawPolygonS(Double[] points, double thickness) {
-               String result = "<path d=\"";
-               for (int i = 0; i < points.length; i++) {
-                       if (i == 0) {
-                               result += "M " + points[i].x + " " + (_bb.height - points[i].y)
-                                               + " ";
-                       } else {
-                               result += "L " + points[i].x + " " + (_bb.height - points[i].y)
-                                               + " ";
-                       }
-               }
-               result += "z\" style=\"fill:none; stroke:" + getRGBString(_curColor)
-                               + "; stroke-width:" + thickness + ";\"/>\n";
-               return result;
-       }
-
-       @Override
-       public String fillPolygonS(Double[] points, Color col) {
-               String result = "<path d=\"";
-               for (int i = 0; i < points.length; i++) {
-                       if (i == 0) {
-                               result += "M " + points[i].x + " " + (_bb.height - points[i].y)
-                                               + " ";
-                       } else {
-                               result += "L " + points[i].x + " " + (_bb.height - points[i].y)
-                                               + " ";
-                       }
-               }
-               result += "z\" fill=\""+getRGBString(col)+"\" style=\"stroke:none;\"/>\n";
-               return result;
-       }
-       
-       @Override
-       public String drawBaseStartS(int index) {
-               return "";
-       }
-
-       @Override
-       public String drawBaseEndS(int index) {
-               return "";
-       }
-
-       @Override
-       public String drawBasePairStartS(int i, int j, ModeleBP bps) {
-               return "";
-       }
-
-       @Override
-       public String drawBasePairEndS(int index) {
-               return "";
-       }
-
-       @Override
-       public String drawBackboneStartS(int i, int j) {
-               return "";
-       }
-
-       @Override
-       public String drawBackboneEndS(int index) {
-               return "";
-       }
-
-}