JAL-3032 adds Java 8 functionality (2/2)

[jalview.git] / src2 / fr / orsay / lri / varna / models / naView / Connection.java

diff --git a/src2/fr/orsay/lri/varna/models/naView/Connection.java b/src2/fr/orsay/lri/varna/models/naView/Connection.java
new file mode 100644 (file)
index 0000000..bca820b
--- /dev/null
+++ b/src2/fr/orsay/lri/varna/models/naView/Connection.java
@@ -0,0 +1,114 @@
+/*
+ VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases.
+ Copyright (C) 2008  Kevin Darty, Alain Denise and Yann Ponty.
+ electronic mail : Yann.Ponty@lri.fr
+ paper mail : LRI, bat 490 Université Paris-Sud 91405 Orsay Cedex France
+
+ This file is part of VARNA version 3.1.
+ VARNA version 3.1 is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
+ as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+
+ VARNA version 3.1 is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
+ without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+ See the GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License along with VARNA version 3.1.
+ If not, see http://www.gnu.org/licenses.
+ */
+package fr.orsay.lri.varna.models.naView;
+
+public class Connection {
+       private Loop loop = new Loop();
+       private Region region = new Region();
+       // Start and end form the 1st base pair of the region.
+       private int start, end;
+       private double xrad, yrad, angle;
+       // True if segment between this connection and the
+       // next must be extruded out of the circle
+       private boolean extruded;
+       // True if the extruded segment must be drawn long.
+       private boolean broken;
+       
+       private boolean _isNull=false;
+
+       public boolean isNull() {
+               return _isNull;
+       }
+
+       public void setNull(boolean isNull) {
+               _isNull = isNull;
+       }
+
+       
+       public Loop getLoop() {
+               return loop;
+       }
+
+       public void setLoop(Loop loop) {
+               this.loop = loop;
+       }
+
+       public Region getRegion() {
+               return region;
+       }
+
+       public void setRegion(Region region) {
+               this.region = region;
+       }
+
+       public int getStart() {
+               return start;
+       }
+
+       public void setStart(int start) {
+               this.start = start;
+       }
+
+       public int getEnd() {
+               return end;
+       }
+
+       public void setEnd(int end) {
+               this.end = end;
+       }
+
+       public double getXrad() {
+               return xrad;
+       }
+
+       public void setXrad(double xrad) {
+               this.xrad = xrad;
+       }
+
+       public double getYrad() {
+               return yrad;
+       }
+
+       public void setYrad(double yrad) {
+               this.yrad = yrad;
+       }
+
+       public double getAngle() {
+               return angle;
+       }
+
+       public void setAngle(double angle) {
+               this.angle = angle;
+       }
+
+       public boolean isExtruded() {
+               return extruded;
+       }
+
+       public void setExtruded(boolean extruded) {
+               this.extruded = extruded;
+       }
+
+       public boolean isBroken() {
+               return broken;
+       }
+
+       public void setBroken(boolean broken) {
+               this.broken = broken;
+       }
+}