returning src2 -> srcjar

[jalview.git] / src2 / fr / orsay / lri / varna / models / rna / ModeleBackboneElement.java

diff --git a/src2/fr/orsay/lri/varna/models/rna/ModeleBackboneElement.java b/src2/fr/orsay/lri/varna/models/rna/ModeleBackboneElement.java
deleted file mode 100644 (file)
index 6b16a05..0000000
--- a/src2/fr/orsay/lri/varna/models/rna/ModeleBackboneElement.java
+++ /dev/null
@@ -1,106 +0,0 @@
-package fr.orsay.lri.varna.models.rna;
-
-import java.awt.Color;
-import java.io.Serializable;
-
-import javax.xml.transform.sax.TransformerHandler;
-
-import org.xml.sax.SAXException;
-import org.xml.sax.helpers.AttributesImpl;
-
-import fr.orsay.lri.varna.utils.XMLUtils;
-
-public class ModeleBackboneElement implements Serializable{
-
-       /**
-        * 
-        */
-       private static final long serialVersionUID = -614968737102943216L;
-
-       public ModeleBackboneElement(int index, BackboneType t)
-       {
-               _index=index;
-               if (t==BackboneType.CUSTOM_COLOR)
-               {
-                       throw new IllegalArgumentException("Error: Missing Color while constructing Backbone");
-               }
-               _type=t;
-       }
-       
-       public ModeleBackboneElement(int index, Color c)
-       {
-               _index=index;
-               _type=BackboneType.CUSTOM_COLOR;
-               _color = c;
-       }
-       
-       public enum BackboneType{
-               SOLID_TYPE ("solid"),
-               DISCONTINUOUS_TYPE ("discontinuous"),
-               MISSING_PART_TYPE ("missing"),
-               CUSTOM_COLOR ("custom");
-               
-               private String label;
-               
-               BackboneType(String s)
-               {
-                       label = s;
-               }
-               
-               public String getLabel()
-               {
-                       return label;
-               }
-               
-               
-               public static BackboneType getType(String lbl)
-               {
-                       BackboneType[] vals = BackboneType.values();
-                       for(int i=0;i<vals.length;i++)
-                       {
-                               if (vals[i].equals(lbl))
-                                       return vals[i];
-                       }
-                       return null;
-               }
-               
-       };
-       
-       private BackboneType _type;
-       private Color _color = null;
-       private int _index;
-
-       
-       public BackboneType getType()
-       {
-               return _type;
-       }
-       
-       public int getIndex()
-       {
-               return _index;
-       }
-       
-       public Color getColor()
-       {
-               return _color;
-       }
-       
-       public static String XML_ELEMENT_NAME = "BackboneElement";
-       public static String XML_VAR_INDEX_NAME = "index";
-       public static String XML_VAR_TYPE_NAME = "type";
-       public static String XML_VAR_COLOR_NAME = "color";      
-       
-       public void toXML(TransformerHandler hd) throws SAXException
-       {
-               AttributesImpl atts = new AttributesImpl();
-               atts.addAttribute("","",XML_VAR_INDEX_NAME,"CDATA",""+_index);
-               atts.addAttribute("","",XML_VAR_TYPE_NAME,"CDATA",""+_type.getLabel());
-               if(_type==BackboneType.CUSTOM_COLOR){
-                       atts.addAttribute("","",XML_VAR_COLOR_NAME,"CDATA",""+XMLUtils.toHTMLNotation(_color)); 
-               }
-               hd.startElement("","",XML_ELEMENT_NAME,atts);
-               hd.endElement("","",XML_ELEMENT_NAME);
-       }
-
-}