Java 11 integration;

[jalview.git] / src2 / fr / orsay / lri / varna / models / rna / ModeleStrand.java

diff --git a/src2/fr/orsay/lri/varna/models/rna/ModeleStrand.java b/src2/fr/orsay/lri/varna/models/rna/ModeleStrand.java
new file mode 100644 (file)
index 0000000..1af1454
--- /dev/null
+++ b/src2/fr/orsay/lri/varna/models/rna/ModeleStrand.java
@@ -0,0 +1,79 @@
+package fr.orsay.lri.varna.models.rna;
+
+import java.util.ArrayList;
+
+public class ModeleStrand {
+       
+       private ArrayList<ModeleBase> _strand = new ArrayList<ModeleBase>();
+       private boolean hasBeenPlaced = false;
+       private boolean strandLeft = false;
+       private boolean strandRight = false;
+       private int levelPosition;
+       
+       public ModeleStrand(){
+               
+       }
+       
+       public void addBase(ModeleBase mb){
+               this._strand.add(mb);
+       }
+       
+       public void addBase(int index, ModeleBase mb){
+               this._strand.add(index, mb);
+       }
+       
+       public int sizeStrand() {
+               return this._strand.size();
+       }
+       
+       public ModeleBase getMB(int a) {        
+               return this._strand.get(a);     
+       }
+       
+       public ArrayList<ModeleBase> getArrayListMB() { 
+               return this._strand;    
+       }
+       
+       public int getLevelPosition(){
+               return this.levelPosition;
+       }
+       
+       public void setLevelPosition(int a){
+               this.levelPosition=a;
+       }
+       
+       public boolean getStrandRight(){
+               return this.strandRight;
+       }
+       
+       public void setStrandRight(boolean bool){
+               this.strandRight=bool;
+       }
+       
+       public boolean getStrandLeft(){
+               return this.strandLeft;
+       }
+       
+       public void setStrandLeft(boolean bool){
+               this.strandLeft=bool;
+       }
+       
+       public boolean hasBeenPlaced(){
+               return this.hasBeenPlaced;
+       }
+       
+       public void setHasBeenPlaced(boolean bool){
+               this.hasBeenPlaced =bool;
+       }
+       
+       public boolean existInStrand(int a){
+               int size =sizeStrand();
+               boolean exist=false; 
+               for (int i=0; i<size;i++){
+                       if(a==this.getMB(i).getIndex()){
+                               exist=true;
+                       }
+               }
+               return exist;
+       }
+}
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