JAL-3032 upgrade to Jmol 14.29.17; clearing of src2 directory

[jalview.git] / src2 / fr / orsay / lri / varna / views / VueBaseValues.java

diff --git a/src2/fr/orsay/lri/varna/views/VueBaseValues.java b/src2/fr/orsay/lri/varna/views/VueBaseValues.java
deleted file mode 100644 (file)
index 980ac65..0000000
--- a/src2/fr/orsay/lri/varna/views/VueBaseValues.java
+++ /dev/null
@@ -1,134 +0,0 @@
-package fr.orsay.lri.varna.views;
-
-import java.awt.Color;
-import java.awt.Dimension;
-import java.awt.GridLayout;
-import java.beans.PropertyChangeEvent;
-import java.beans.PropertyVetoException;
-import java.beans.VetoableChangeListener;
-import java.util.ArrayList;
-import java.util.Vector;
-
-import javax.swing.JPanel;
-import javax.swing.JScrollPane;
-import javax.swing.JTable;
-import javax.swing.event.TableModelEvent;
-import javax.swing.event.TableModelListener;
-import javax.swing.table.AbstractTableModel;
-
-import fr.orsay.lri.varna.VARNAPanel;
-import fr.orsay.lri.varna.components.ColorRenderer;
-import fr.orsay.lri.varna.models.rna.ModeleBase;
-import fr.orsay.lri.varna.models.rna.ModeleBaseNucleotide;
-import fr.orsay.lri.varna.models.rna.ModeleColorMap;
-import fr.orsay.lri.varna.models.rna.RNA;
-
-public class VueBaseValues extends JPanel implements TableModelListener {
-
-       private JTable table;
-       private ValueTableModel _tm;
-       private VARNAPanel _vp;
-       private ArrayList<ModeleBase> data;
-       private ArrayList<Double> _backup;
-       private ArrayList<Object> columns;
-       
-       
-       public VueBaseValues(VARNAPanel vp)
-       {
-               super(new GridLayout(1, 0));
-               _vp = vp;
-               init();
-       }
-       
-       private void init()
-       {
-               Object[] col = {"Number","Base","Value","Preview"};
-               columns = new ArrayList<Object>();
-               for (int i = 0; i < col.length; i++)
-               {
-                       columns.add(col[i]);
-               }
-               
-               _backup = new ArrayList<Double>();
-               data = new ArrayList<ModeleBase>();
-               for (int i = 0; i < _vp.getRNA().get_listeBases().size(); i++) 
-               {
-                       ModeleBase mb = _vp.getRNA().get_listeBases().get(i);
-                       data.add(mb);
-                       _backup.add(mb.getValue());
-               }
-               _tm = new ValueTableModel();
-               table = new JTable(_tm);
-               table.setDefaultRenderer(Color.class, new ColorRenderer(true)); 
-               table.setPreferredScrollableViewportSize(new Dimension(300, 300));
-               table.getModel().addTableModelListener(this);
-               
-               JScrollPane scrollPane = new JScrollPane(table);
-               this.add(scrollPane);
-       }
-       
-       public void cancelChanges()
-       {
-               for (int i = 0; i < _vp.getRNA().get_listeBases().size(); i++) 
-               {
-                       ModeleBase mb = _vp.getRNA().get_listeBases().get(i);
-                       mb.setValue(_backup.get(i));
-               }
-         _vp.getRNA().rescaleColorMap(_vp.getColorMap());
-       }
-
-       private class ValueTableModel extends AbstractTableModel {
-           public String getColumnName(int col) {
-               return columns.get(col).toString();
-           }
-           public int getRowCount() { return data.size(); }
-           public int getColumnCount() { return columns.size(); }
-           public Object getValueAt(int row, int col) {
-               ModeleBase mb = data.get(row);
-               if (col==0)
-               {
-                       return new Integer(mb.getBaseNumber());
-               }
-               else if (col==1)
-               {
-                       return new String(mb.getContent());
-               } 
-               else if (col==2)
-               {
-                       return new Double(mb.getValue());
-               } 
-               else if (col==3)
-               {
-                       return _vp.getColorMap().getColorForValue(mb.getValue());
-               }
-               return "N/A";
-           }
-           public boolean isCellEditable(int row, int col)
-               { 
-                       if (getColumnName(col).equals("Value")) 
-                               return true;
-                       return false;
-               }
-           public void setValueAt(Object value, int row, int col) {
-               if (getColumnName(col).equals("Value"))
-               {
-                 data.get(row).setValue(((Double)value));
-                 _vp.getRNA().rescaleColorMap(_vp.getColorMap());
-                 _vp.repaint();
-                 fireTableCellUpdated(row, col);
-               }
-           }
-           public Class getColumnClass(int c) {
-               return getValueAt(0, c).getClass();
-           }
-       }
-
-       public void tableChanged(TableModelEvent e) {
-               if (e.getType() == TableModelEvent.UPDATE)
-               {
-                       table.repaint();
-               }
-               
-       }
-
-}