JAL-3032 upgrade to Jmol 14.29.17; clearing of src2 directory
[jalview.git] / src2 / fr / orsay / lri / varna / views / VueChemProbAnnotation.java
diff --git a/src2/fr/orsay/lri/varna/views/VueChemProbAnnotation.java b/src2/fr/orsay/lri/varna/views/VueChemProbAnnotation.java
deleted file mode 100644 (file)
index 536d3fa..0000000
+++ /dev/null
@@ -1,172 +0,0 @@
-       package fr.orsay.lri.varna.views;
-
-
-       import java.awt.Color;
-import java.awt.Dimension;
-import java.awt.FlowLayout;
-import java.awt.GridLayout;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.ItemEvent;
-import java.awt.event.ItemListener;
-
-import javax.swing.JButton;
-import javax.swing.JComboBox;
-import javax.swing.JLabel;
-import javax.swing.JOptionPane;
-import javax.swing.JPanel;
-import javax.swing.JSpinner;
-import javax.swing.SpinnerNumberModel;
-import javax.swing.event.ChangeEvent;
-import javax.swing.event.ChangeListener;
-
-import fr.orsay.lri.varna.VARNAPanel;
-import fr.orsay.lri.varna.models.annotations.ChemProbAnnotation;
-import fr.orsay.lri.varna.models.annotations.HighlightRegionAnnotation;
-
-
-public class VueChemProbAnnotation implements ChangeListener, ActionListener, ItemListener {
-
-               protected VARNAPanel _vp;
-               private JPanel panel;
-               protected ChemProbAnnotation _an;
-               private static int CONTROL_HEIGHT = 50;
-               private static int TITLE_WIDTH = 70;
-               private static int CONTROL_WIDTH = 200;
-               protected JButton color  = new JButton();
-               JSpinner intensity;
-               JComboBox outward = new JComboBox(new String[]{"Inward","Outward"});
-               JComboBox type = new JComboBox(ChemProbAnnotation.ChemProbAnnotationType.values());
-
-               public VueChemProbAnnotation(VARNAPanel vp, ChemProbAnnotation an) {
-                       _an = an;
-                       _vp = vp;
-
-                       panel = new JPanel();
-                       panel.setLayout(new FlowLayout(FlowLayout.LEFT));
-
-
-                       JPanel outlinep = new JPanel();
-                       JLabel l1 = new JLabel("Color: ");
-                       l1.setPreferredSize(new Dimension(TITLE_WIDTH,CONTROL_HEIGHT));
-                       color.setContentAreaFilled(false);
-                       color.setOpaque(true);
-                       color.setPreferredSize(new Dimension(CONTROL_WIDTH,CONTROL_HEIGHT));
-                       color.setBackground(_an.getColor());
-                       color.addActionListener(this);
-                       color.setActionCommand("outline");
-                       outlinep.add(l1);
-                       outlinep.add(color);
-                       
-                       
-                       JPanel radiusp = new JPanel();
-                       l1 = new JLabel("Intensity: ");
-                       l1.setPreferredSize(new Dimension(TITLE_WIDTH,CONTROL_HEIGHT));
-                       SpinnerNumberModel jm = new SpinnerNumberModel(_an.getIntensity(),0.01,10.0,0.01);
-                       intensity = new JSpinner(jm);
-                       radiusp.add(l1);
-                       radiusp.add(intensity);
-                       intensity.addChangeListener(this);
-
-                       JPanel dirp = new JPanel();
-                       l1 = new JLabel("Direction: ");
-                       l1.setPreferredSize(new Dimension(TITLE_WIDTH,CONTROL_HEIGHT));
-                       outward.addItemListener(this);
-                       dirp.add(l1);
-                       dirp.add(outward);
-
-                       JPanel typep = new JPanel();
-                       l1 = new JLabel("Type: ");
-                       l1.setPreferredSize(new Dimension(TITLE_WIDTH,CONTROL_HEIGHT));
-                       type.addItemListener(this);
-                       typep.add(l1);
-                       typep.add(type);
-                       
-                       
-                       
-                       JPanel jp = new JPanel();
-                       jp.setLayout(new GridLayout(4,1));
-                       jp.add(outlinep);
-                       jp.add(radiusp);
-                       jp.add(dirp);
-                       jp.add(typep);
-                       panel.add(jp);
-               }
-
-               public JPanel getPanel() {
-                       return panel;
-               }
-
-               public VARNAPanel get_vp() {
-                       return _vp;
-               }
-               
-               HighlightRegionAnnotation _backup = null;
-               
-               public boolean show() {
-                       boolean accept = false;
-                       intensity.setValue(_an.getIntensity());
-                       color.setBackground(_an.getColor());
-                       type.setSelectedItem(_an.getType());
-                       outward.setSelectedItem((_an.isOut()?"Inward":"Outward"));
-                       
-                       if (JOptionPane.showConfirmDialog(_vp, getPanel(),
-                                       "Edit chemical probing annotation", JOptionPane.OK_CANCEL_OPTION,
-                                       JOptionPane.PLAIN_MESSAGE) == JOptionPane.OK_OPTION) 
-                       {
-                               accept = true;
-                       } 
-                       _vp.repaint();
-                       return accept;
-               }
-
-               public void stateChanged(ChangeEvent e) {
-                       if (e.getSource().equals(intensity))
-                       {
-                               Object val = intensity.getValue();
-                               if (val instanceof Double)
-                               {                                       
-                                       _an.setIntensity(((Double)val).doubleValue());
-                                       _vp.repaint();
-                               }
-                       }
-                       
-               }
-
-       public void actionPerformed(ActionEvent e) {
-               if (e.getActionCommand().equals("outline")) {
-                       // BH j2s SwingJS asynchronous for JavaScript; synchronous for Java
-                       _vp.getVARNAUI().showColorDialog("Choose new outline color", _an.getColor(), new Runnable() {
-
-                               @Override
-                               public void run() {
-                                       Color c = (Color) _vp.getVARNAUI().dialogReturnValue;
-                                       if (c != null) {
-                                               _an.setColor(c);
-                                               color.setBackground(_an.getColor());
-                                               _vp.repaint();
-                                       }
-                               }
-
-                       });
-               }
-
-       }
-
-               public void itemStateChanged(ItemEvent e) {
-                       if (e.getSource()==outward)
-                       {
-                               _an.setOut(!e.getItem().equals("Outward"));
-                               _vp.repaint();
-                       }
-                       else if ((e.getSource()==type)&&(e.getItem() instanceof ChemProbAnnotation.ChemProbAnnotationType))
-                       {
-                               ChemProbAnnotation.ChemProbAnnotationType t = (ChemProbAnnotation.ChemProbAnnotationType) e.getItem();
-                               _an.setType(t);
-                               _vp.repaint();
-                       }
-                       
-               }
-       }
-
-