JAL-3032 upgrade to Jmol 14.29.17; clearing of src2 directory
[jalview.git] / src2 / fr / orsay / lri / varna / views / VueHighlightRegionEdit.java
diff --git a/src2/fr/orsay/lri/varna/views/VueHighlightRegionEdit.java b/src2/fr/orsay/lri/varna/views/VueHighlightRegionEdit.java
deleted file mode 100644 (file)
index ca01a25..0000000
+++ /dev/null
@@ -1,200 +0,0 @@
-package fr.orsay.lri.varna.views;
-
-
-       import java.awt.Color;
-import java.awt.Dimension;
-       import java.awt.FlowLayout;
-import java.awt.GridLayout;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.util.ArrayList;
-
-import javax.swing.JButton;
-import javax.swing.JColorChooser;
-       import javax.swing.JLabel;
-import javax.swing.JOptionPane;
-       import javax.swing.JPanel;
-       import javax.swing.JSlider;
-import javax.swing.JSpinner;
-import javax.swing.SpinnerNumberModel;
-import javax.swing.event.ChangeEvent;
-import javax.swing.event.ChangeListener;
-
-
-import fr.orsay.lri.varna.VARNAPanel;
-import fr.orsay.lri.varna.models.annotations.HighlightRegionAnnotation;
-import fr.orsay.lri.varna.models.rna.ModeleBase;
-
-       public class VueHighlightRegionEdit implements ChangeListener, ActionListener {
-
-               private VARNAPanel _vp;
-               private JSlider _fromSlider;
-               private JSlider _toSlider;
-               private JPanel panel;
-               private HighlightRegionAnnotation _an;
-               private static int CONTROL_HEIGHT = 50;
-               private static int TITLE_WIDTH = 70;
-               private static int CONTROL_WIDTH = 200;
-               private JButton fillShow  = new JButton();
-               private JButton outlineShow  = new JButton();
-               JSpinner rad;
-
-               public VueHighlightRegionEdit(VARNAPanel vp, HighlightRegionAnnotation an) {
-                       _an = an;
-                       _vp = vp;
-                       _toSlider = new JSlider(JSlider.HORIZONTAL, 0,vp.getRNA().getSize()-1,0);
-                       _toSlider.setMajorTickSpacing(10);
-                       _toSlider.setPaintTicks(true);
-                       _toSlider.setPaintLabels(true);
-                       _toSlider.setPreferredSize(new Dimension(CONTROL_WIDTH, CONTROL_HEIGHT));
-
-                       _fromSlider = new JSlider(JSlider.HORIZONTAL, 0,vp.getRNA().getSize()-1,0);
-                       _fromSlider.setMajorTickSpacing(10);
-                       _fromSlider.setPaintTicks(true);
-                       _fromSlider.setPaintLabels(true);
-                       _fromSlider.setPreferredSize(new Dimension(CONTROL_WIDTH, CONTROL_HEIGHT));
-
-                       _fromSlider.addChangeListener(this);
-                       _toSlider.addChangeListener(this);
-
-                       panel = new JPanel();
-                       panel.setLayout(new FlowLayout(FlowLayout.LEFT));
-
-                       JPanel fromp = new JPanel();
-                       JLabel l1 = new JLabel("From: ");
-                       l1.setPreferredSize(new Dimension(TITLE_WIDTH,CONTROL_HEIGHT));
-                       fromp.add(l1);
-                       fromp.add(_fromSlider);
-
-                       JPanel top = new JPanel();
-                       l1 = new JLabel("To: ");
-                       l1.setPreferredSize(new Dimension(TITLE_WIDTH,CONTROL_HEIGHT));
-                       top.add(l1);
-                       top.add(_toSlider);
-
-                       JPanel outlinep = new JPanel();
-                       l1 = new JLabel("Outline color: ");
-                       l1.setPreferredSize(new Dimension(TITLE_WIDTH,CONTROL_HEIGHT));
-                       outlineShow.setContentAreaFilled(false);
-                       outlineShow.setOpaque(true);
-                       outlineShow.setPreferredSize(new Dimension(CONTROL_WIDTH,CONTROL_HEIGHT));
-                       outlineShow.setBackground(an.getOutlineColor());
-                       outlineShow.addActionListener(this);
-                       outlineShow.setActionCommand("outline");
-                       outlinep.add(l1);
-                       outlinep.add(outlineShow);
-                       
-                       JPanel fillp = new JPanel();
-                       l1 = new JLabel("Fill color: ");
-                       l1.setPreferredSize(new Dimension(TITLE_WIDTH,CONTROL_HEIGHT));
-                       fillShow.setContentAreaFilled(false);
-                       fillShow.setOpaque(true);
-                       fillShow.setPreferredSize(new Dimension(CONTROL_WIDTH,CONTROL_HEIGHT));
-                       fillShow.setBackground(an.getFillColor());
-                       fillShow.addActionListener(this);
-                       fillShow.setActionCommand("fill");
-                       fillp.add(l1);
-                       fillp.add(fillShow);
-                       
-                       JPanel radiusp = new JPanel();
-                       l1 = new JLabel("Radius: ");
-                       l1.setPreferredSize(new Dimension(TITLE_WIDTH,CONTROL_HEIGHT));
-                       SpinnerNumberModel jm = new SpinnerNumberModel(_an.getRadius(),1.0,50.0,0.1);
-                       rad = new JSpinner(jm);
-                       rad.setPreferredSize(new Dimension(CONTROL_WIDTH,CONTROL_HEIGHT));
-                       radiusp.add(l1);
-                       radiusp.add(rad);
-                       rad.addChangeListener(this);
-                       
-                       JPanel jp = new JPanel();
-                       jp.setLayout(new GridLayout(5,1));
-                       jp.add(fromp);
-                       jp.add(top);
-                       jp.add(outlinep);
-                       jp.add(fillp);
-                       jp.add(radiusp);
-                       panel.add(jp);
-               }
-
-               public JPanel getPanel() {
-                       return panel;
-               }
-
-               public double getAngle() {
-                       return _toSlider.getValue();
-               }
-
-               public VARNAPanel get_vp() {
-                       return _vp;
-               }
-               
-               HighlightRegionAnnotation _backup = null;
-               
-               public boolean show() {
-                       boolean accept = false;
-                       int from = _an.getMinIndex();
-                       int to = _an.getMaxIndex();
-                       _fromSlider.setValue(from);
-                       _toSlider.setValue(to );
-                       if (JOptionPane.showConfirmDialog(_vp, getPanel(),
-                                       "Edit region annotation", JOptionPane.OK_CANCEL_OPTION,
-                                       JOptionPane.PLAIN_MESSAGE) == JOptionPane.OK_OPTION) 
-                       {
-                               accept = true;
-                       } 
-                       _vp.repaint();
-                       return accept;
-               }
-
-               public void stateChanged(ChangeEvent e) {
-                       if ((e.getSource()==_toSlider)||(e.getSource()==_fromSlider))
-                       {
-                       int from  = _fromSlider.getValue(); 
-                       int to  = _toSlider.getValue(); 
-                       if (from>to)
-                       {
-                               if (e.getSource().equals(_fromSlider))
-                               {
-                                       _toSlider.setValue(from);
-                               }
-                               else if (e.getSource().equals(_toSlider))
-                               {
-                                       _fromSlider.setValue(to);
-                               }
-                       }
-                       from  = _fromSlider.getValue(); 
-                       to  = _toSlider.getValue(); 
-                       _an.setBases(_vp.getRNA().getBasesBetween(from, to));
-                       _vp.repaint();
-                       }
-                       else if (e.getSource().equals(rad))
-                       {
-                               Object val = rad.getValue();
-                               if (val instanceof Double)
-                               {                                       
-                                       _an.setRadius(((Double)val).doubleValue());
-                               }
-                       }
-                       
-               }
-
-               public void actionPerformed(ActionEvent e) {
-                       if (e.getActionCommand().equals("outline"))
-                       {
-                         Color c = JColorChooser.showDialog(getPanel(), "Choose new outline color", _an.getOutlineColor());
-                         if (c!= null)
-                         {   _an.setOutlineColor(c);  }
-                       }
-                       else if (e.getActionCommand().equals("fill"))
-                       {
-                                 Color c = JColorChooser.showDialog(getPanel(), "Choose new fill color", _an.getFillColor());
-                                 if (c!= null)
-                                 {  _an.setFillColor(c); }
-                       }
-                       outlineShow.setBackground(_an.getOutlineColor());
-                       fillShow.setBackground(_an.getFillColor());
-                       _vp.repaint();
-                       
-               }
-       }
-