JAL-3032 upgrade to Jmol 14.29.17; clearing of src2 directory

[jalview.git] / src2 / javajs / util / BC.java

diff --git a/src2/javajs/util/BC.java b/src2/javajs/util/BC.java
deleted file mode 100644 (file)
index 5722efd..0000000
--- a/src2/javajs/util/BC.java
+++ /dev/null
@@ -1,186 +0,0 @@
-package javajs.util;
-
-/**
- * byte converter
- * 
- * 
- * @author Bob Hanson hansonr@stolaf.edu
- * 
- */
-public class BC {
-
-  public BC() {
-    // unnecessary to instantialize unless subclassed
-  }
-  
-  public static float bytesToFloat(byte[] bytes, int j, boolean isBigEndian) throws Exception {
-    return intToFloat(bytesToInt(bytes, j, isBigEndian));
-  }
-
-  public static int bytesToShort(byte[] bytes, int j, boolean isBigEndian) {
-    int n = (isBigEndian ? (bytes[j + 1] & 0xff) | (bytes[j] & 0xff) << 8
-        : (bytes[j++] & 0xff) | (bytes[j++] & 0xff) << 8);
-      return (n > 0x7FFF ? n - 0x10000 : n);
-  }
-
-  public static int bytesToInt(byte[] bytes, int j, boolean isBigEndian) {
-    int n = (isBigEndian ? (bytes[j + 3] & 0xff) | (bytes[j + 2] & 0xff) << 8
-        | (bytes[j + 1] & 0xff) << 16 | (bytes[j] & 0xff) << 24
-        : (bytes[j++] & 0xff) | (bytes[j++] & 0xff) << 8
-            | (bytes[j++] & 0xff) << 16 | (bytes[j++] & 0xff) << 24);
-    /**
-     * @j2sNative
-     * 
-     * return (n > 0x7FFFFFFF ? n - 0x100000000 : n);
-     *   
-     */
-    {
-      return n;
-    }
-  }
-
-  public static int intToSignedInt(int n) {
-    /**
-     * @j2sNative
-     * 
-     * return (n > 0x7FFFFFFF ? n - 0x100000000 : n);
-     *   
-     */
-    {
-      return n;
-    }    
-  }
-  public static float intToFloat(int x) throws Exception {
-    /**
-     * see http://en.wikipedia.org/wiki/Binary32
-     * 
-     * [sign]      [8 bits power] [23 bits fraction]
-     * 0x80000000  0x7F800000      0x7FFFFF
-     * 
-     * (untested)
-     * 
-     * @j2sNative
-     * 
-     *       if (x == 0) return 0;
-     *       var o = javajs.util.BC;
-     *       if (o.fracIEEE == null)
-     *         o.setFracIEEE();
-     *       var m = ((x & 0x7F800000) >> 23);
-     *       return ((x & 0x80000000) == 0 ? 1 : -1) * o.shiftIEEE$D$I((x & 0x7FFFFF) | 0x800000, m - 149);
-     *  
-     */
-    {
-    return Float.intBitsToFloat(x);
-    }
-  }
-
-  /**
-   * see http://en.wikipedia.org/wiki/Binary64
-   *  
-   * not concerning ourselves with very small or very large numbers and getting
-   * this exactly right. Just need a float here.
-   * 
-   * @param bytes
-   * @param j
-   * @param isBigEndian
-   * @return float
-   */
-  public static float bytesToDoubleToFloat(byte[] bytes, int j, boolean isBigEndian) {
-    {
-      // IEEE754: sign (1 bit), exponent (11 bits), fraction (52 bits).
-      // seeeeeee eeeeffff ffffffff ffffffff ffffffff xxxxxxxx xxxxxxxx xxxxxxxx
-      //     b1      b2       b3       b4       b5    ---------float ignores----
-
-        if (fracIEEE == null)
-           setFracIEEE();
-        
-      /**
-       * @j2sNative
-       *       var b1, b2, b3, b4, b5;
-       *       
-       *       if (isBigEndian) {
-       *       b1 = bytes[j] & 0xFF;
-       *       b2 = bytes[j + 1] & 0xFF;
-       *       b3 = bytes[j + 2] & 0xFF;
-       *       b4 = bytes[j + 3] & 0xFF;
-       *       b5 = bytes[j + 4] & 0xFF;
-       *       } else {
-       *       b1 = bytes[j + 7] & 0xFF;
-       *       b2 = bytes[j + 6] & 0xFF;
-       *       b3 = bytes[j + 5] & 0xFF;
-       *       b4 = bytes[j + 4] & 0xFF;
-       *       b5 = bytes[j + 3] & 0xFF;
-       *       }
-       *       var s = ((b1 & 0x80) == 0 ? 1 : -1);
-       *       var e = (((b1 & 0x7F) << 4) | (b2 >> 4)) - 1026;
-       *       b2 = (b2 & 0xF) | 0x10;
-       *       return s * (C$.shiftIEEE$D$I(b2, e) +C$.shiftIEEE$D$I(b3, e - 8) + C$.shiftIEEE$D$I(b4, e - 16)
-       *         + C$.shiftIEEE$D$I(b5, e - 24));
-       */
-      {
-        double d;
-        
-        if (isBigEndian)
-          d = Double.longBitsToDouble((((long) bytes[j]) & 0xff) << 56
-             | (((long) bytes[j + 1]) & 0xff) << 48
-             | (((long) bytes[j + 2]) & 0xff) << 40
-             | (((long) bytes[j + 3]) & 0xff) << 32
-             | (((long) bytes[j + 4]) & 0xff) << 24
-             | (((long) bytes[j + 5]) & 0xff) << 16
-             | (((long) bytes[j + 6]) & 0xff) << 8 
-             | (((long) bytes[7]) & 0xff));
-        else
-          d = Double.longBitsToDouble((((long) bytes[j + 7]) & 0xff) << 56
-             | (((long) bytes[j + 6]) & 0xff) << 48
-             | (((long) bytes[j + 5]) & 0xff) << 40
-             | (((long) bytes[j + 4]) & 0xff) << 32
-             | (((long) bytes[j + 3]) & 0xff) << 24
-             | (((long) bytes[j + 2]) & 0xff) << 16
-             | (((long) bytes[j + 1]) & 0xff) << 8 
-             | (((long) bytes[j]) & 0xff));
-        return (float) d;
-      }
-
-    }
-  }
-
-  private static float[] fracIEEE;
-
-  private static void setFracIEEE() {
-    fracIEEE = new float[270];
-    for (int i = 0; i < 270; i++)
-      fracIEEE[i] = (float) Math.pow(2, i - 141);
-    //    System.out.println(fracIEEE[0] + "  " + Parser.FLOAT_MIN_SAFE);
-    //    System.out.println(fracIEEE[269] + "  " + Float.MAX_VALUE);
-  }
-
-  /**
-   * only concerned about reasonable float values here -- private but not designated; called by JavaScript
-   * 
-   * @param f
-   * @param i
-   * @return f * 2^i
-   */
-  static double shiftIEEE(double f, int i) {
-    if (f == 0 || i < -140)
-      return 0;
-    if (i > 128)
-      return Float.MAX_VALUE;
-    return f * fracIEEE[i + 140];
-  }
-
-//  static {
-//    setFracIEEE();
-//    for (int i = -50; i < 50; i++) {
-//      float f = i * (float) (Math.random() * Math.pow(2, Math.random() * 100 - 50));
-//      int x = Float.floatToIntBits(f);
-//      int m = ((x & 0x7F800000) >> 23);
-//      float f1 = (float) (f == 0 ? 0 : ((x & 0x80000000) == 0 ? 1 : -1) * shiftIEEE((x & 0x7FFFFF) | 0x800000, m - 149));
-//      System.out.println(f + "  " + f1);
-//    }
-//    System.out.println("binarydo");
-//  }
-
-
-
-}