--- /dev/null
+
+Status
+======
+
+7/3/2018
+
+VARNA is running in Jalview in a browser.
+
+The only capability not enabled is the "duplicate" menu item.
+This is because SwingJS does not implement serialization.
+
+1/10/2018
+
+fixes VueUI handling of JFileChooser and JColorChooser callbacks not using revised SelectedFile and SelectedColor property names
+implements blinking iterator when dragging to reposition RNA blob
+implements annotations
+
+1/7/2018
+
+JTable implemented, including editing; needs better efficiency
+Modal dialogs are working, including file open.
+Drag-and-drop of Files is working
+ - note that the dropped File object has bytes field with data
+Animated interpolation working; switched to simple JTimer mechanism for Java and JavaScript
+
+1/2/2018
+
+Varna is running.
+modal JOptionPane implemented fully
+JColorChooser implemented fully
+JTable implemented; still some minor issues
+
+
+Modal dialogs are working, except for FileOpen.
+Popup menu is working.
+
+
+Issues
+======
+
+- JTable has minor issues:
+ - Headings are not shaded
+ - needs attention to higher efficiency
+
+- DnD only implemented for files.
+ - probably x,y coord are off - untested
+ - needs checking for isolated frames (works in applet)
+
+
+Modifications for SwingJS
+=========================
+
+Search for "@j2sNative", "BH", or "SwingJS"
+
+
+VARNA.java
+----------
+
+moved to fr.orsay.lri.varna (all SwingJS project files must be in packages)
+
+adds default RNA JavaScript:
+
+ if (!thisApplet.__Info.sequenceDBN) {
+ thisApplet.__Info.sequenceDBN = "GGGGCCAAUAUGGCCAUCC";
+ thisApplet.__Info.structureDBN = "((((((.....))))..))";
+ thisApplet.__Info.title = prompt("Title?","Hello RNA world, from SwingJS!");
+ }
+
+
+
+fr.orsay.lri.varna.factories.RNAFactory
+---------------------------------------
+
+Cannot depend upon Java ArrayIndexOutOfBounds for trapping when testing formats
+
+JAVA fix: Removing unnecessary exception print stack traces during testing for formats
+JAVA fix: RNAFactory was not closing file reader
+
+
+
+fr.orsay.lri.varna.applications.VARNAEditor
+-------------------------------------------
+
+switched to RNAFactory.loadSecStr((File) o) for drag-drop allows passing byte data
+
+
+fr.orsay.lri.varna.applications.VARNAGUI
+----------------------------------------
+
+switched to RNAFactory.loadSecStr((File) o) for drag-drop allows passing byte data
+
+
+
+fr.orsay.lri.varna.controlers.ControleurBaseSpecialColorEditor
+--------------------------------------------------------------
+
+Since the editor is not modal, we have to catch the window hiding event
+before closing the editor.
+
+
+
+fr.orsay.lri.varna.controlers.ControleurInterpolator
+----------------------------------------------------
+
+switch to JTimer for interpolation
+JavaScript uses 2-second delay; Java uses 15-second delay
+
+
+
+fr.orsay.lri.varna.views.PrinterTest.java
+-----------------------------------------
+
+simpler test that does not use java.awt.font.TextLayout, which is not implemented.
+
+
+
+fr.orsay.lri.varna.VarnaPanel.java
+----------------------------------
+
+now implements PropertyChangeListener for asynchronous callback.
+
+
+
+fr.orsay.lri.varna.views.VueUI.java
+------------------------------------
+
+All JOptionPane, JFileChooser, and JColorChooser action made asynchronous.
+Basically, the results OK, CANCEL, YES, NO, CLOSED, and custom button index
+are delivered to instances of runnable via a PropertyChangeListener callback
+to the indicated parent frame.
+
+Simple ERROR_OPTION and WARN_OPTION messages are handled via JavaScript Alert;
+fall back options for simple showConfirmDialog and showInputDialog are used
+automatically if the parent frame does not implement PropertyChangeListener.
+
+Initial JavaScript-only return is:
+
+ for int-returning methods, NaN,
+ testable as value != Math.floor(value), where value is an int, and
+ for Object-returning methods, an Object that implements UIResource,
+ testable as event.getNewValue() instanceof UIResource.
+
+This allows full compatibility in Java and JavaScript.
+
+
+See notes in fr.orsay.lri.varna.views.VueUI.java.
+
+
+
+fr.orsay.lri.varna.views.VueMenu.java
+-------------------------------------
+
+changes JLabel to JMenuItem - not 100% sure why that is necessary.
+changes JSeparator to JPopupMenu.Separator
+
+
+
+fr.orsay.lri.varna.views.VueAbout.java
+--------------------------------------
+
+added simple JTimer for asynchronous animation
+added asynchronous callback modal option for JavaScript
+
git://source.jalview.org / jalview.git / blobdiff