JAL-3541 selectively merged build.gradle and gradle.properties

[jalview.git] / srcjar / fr / orsay / lri / varna / components / BaseTableModel.java

diff --git a/srcjar/fr/orsay/lri/varna/components/BaseTableModel.java b/srcjar/fr/orsay/lri/varna/components/BaseTableModel.java
new file mode 100644 (file)
index 0000000..cf04d61
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+++ b/srcjar/fr/orsay/lri/varna/components/BaseTableModel.java
@@ -0,0 +1,110 @@
+/*
+ VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases.
+ Copyright (C) 2008  Kevin Darty, Alain Denise and Yann Ponty.
+ electronic mail : Yann.Ponty@lri.fr
+ paper mail : LRI, bat 490 Université Paris-Sud 91405 Orsay Cedex France
+
+ This file is part of VARNA version 3.1.
+ VARNA version 3.1 is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
+ as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+
+ VARNA version 3.1 is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
+ without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+ See the GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License along with VARNA version 3.1.
+ If not, see http://www.gnu.org/licenses.
+ */
+package fr.orsay.lri.varna.components;
+
+import java.awt.Color;
+import java.util.ArrayList;
+
+import javax.swing.table.AbstractTableModel;
+
+import fr.orsay.lri.varna.models.BaseList;
+import fr.orsay.lri.varna.models.VARNAConfig;
+import fr.orsay.lri.varna.models.rna.ModeleBase;
+import fr.orsay.lri.varna.models.rna.ModelBaseStyle;
+
+
+public class BaseTableModel extends AbstractTableModel {
+       /**
+        * 
+        */
+       private static final long serialVersionUID = 1L;
+
+       private String[] columnNames = { "Numbers", "Base", "Outline Color", "Inner Color",
+                       "Name Color", "Number Color" };
+       private ArrayList<ArrayList<Object>> data = new ArrayList<ArrayList<Object>>();
+       private ArrayList<BaseList> _bases;
+       private boolean _singleBases = true;
+
+       public BaseTableModel(ArrayList<BaseList> bases) {
+               _bases = bases;
+               ArrayList<Object> ligne;
+               for (int i = 0; i < bases.size(); i++) {
+                       ligne = new ArrayList<Object>();
+                       BaseList bl  = bases.get(i);
+                       if (bl.size()!=1)
+                       {
+                               _singleBases = false;
+                       }
+                       ligne.add(bl.getNumbers());
+                       ligne.add(bl.getContents());
+                       ligne.add(bl.getAverageOutlineColor());
+                       ligne.add(bl.getAverageInnerColor());
+                       ligne.add(bl.getAverageNameColor());
+                       ligne.add(bl.getAverageNumberColor());
+                       this.data.add(ligne);   
+               }
+
+       }
+
+       public int getColumnCount() {
+               return columnNames.length;
+       }
+
+       public int getRowCount() {
+               return data.size();
+       }
+
+       public String getColumnName(int col) {
+               return columnNames[col];
+       }
+
+       public Object getValueAt(int row, int col) {
+               return data.get(row).get(col);
+       }
+
+       /*
+        * JTable uses this method to determine the default renderer/ editor for
+        * each cell. If we didn't implement this method, then the last column would
+        * contain text ("true"/"false"), rather than a check box.
+        */
+       @SuppressWarnings("unchecked")
+       public Class getColumnClass(int c) {
+               return getValueAt(0, c).getClass();
+       }
+
+       public boolean isCellEditable(int row, int col) {
+               // Note that the data/cell address is constant,
+               // no matter where the cell appears onscreen.
+               if (col < 1) {
+                       return false;
+               } else {
+                       return true;
+               }
+       }
+
+       public void setValueAt(Object value, int row, int col) {
+               data.get(row).set(col, value);
+               if (col == 1 && _singleBases)
+               {
+                       ModeleBase mb = _bases.get(row).getBases().get(0);
+                       mb.setContent(value.toString());
+               }
+               fireTableCellUpdated(row, col);
+
+       }
+}
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