JAL-3026 srcjar files for VARNA and log4j
[jalview.git] / srcjar / fr / orsay / lri / varna / components / GradientEditorPanel.java
diff --git a/srcjar/fr/orsay/lri/varna/components/GradientEditorPanel.java b/srcjar/fr/orsay/lri/varna/components/GradientEditorPanel.java
new file mode 100644 (file)
index 0000000..f6d835a
--- /dev/null
@@ -0,0 +1,344 @@
+package fr.orsay.lri.varna.components;
+
+import java.awt.Color;
+import java.awt.Cursor;
+import java.awt.Graphics;
+import java.awt.Graphics2D;
+import java.awt.RenderingHints;
+import java.awt.event.MouseEvent;
+import java.awt.event.MouseListener;
+import java.awt.event.MouseMotionListener;
+
+import javax.swing.JColorChooser;
+import javax.swing.JPanel;
+
+import fr.orsay.lri.varna.models.rna.ModeleColorMap;
+
+public class GradientEditorPanel extends JPanel implements MouseListener, MouseMotionListener{
+               ModeleColorMap _mcm;
+               
+               public GradientEditorPanel (ModeleColorMap mcm)
+               { 
+                       _mcm = mcm;
+                       this.addMouseListener( this);
+                       this.addMouseMotionListener(this);
+               }
+               
+               public void setColorMap(ModeleColorMap mcm)
+               {
+                       _mcm = mcm;
+                       repaint();
+                       firePropertyChange("PaletteChanged","a","b");
+               }
+               
+               public ModeleColorMap getColorMap()
+               {
+                       return _mcm;
+               }
+
+               private final static int TRIGGERS_SEMI_WIDTH = 2;
+               private final static int PALETTE_HEIGHT = 11;
+               private final static int REMOVE_HEIGHT = 11;
+               private final static int TOLERANCE = 5;
+               private final static int GAP = 4;
+               private final Color EDGES = Color.gray.brighter();
+               private final Color BUTTONS = Color.LIGHT_GRAY.brighter();
+               
+               public int getStartChoose()
+               {
+                       return getHeight()-PALETTE_HEIGHT-REMOVE_HEIGHT-GAP-1;
+               }
+               
+               public int getEndChoose()
+               {
+                       return getStartChoose()+PALETTE_HEIGHT;
+               }
+               
+               public int getStartRemove()
+               {
+                       return getEndChoose()+GAP;
+               }
+
+               public int getEndRemove()
+               {
+                       return getStartRemove()+REMOVE_HEIGHT;
+               }
+               
+               private int getStripeHeight()
+               {
+                       return getHeight()-PALETTE_HEIGHT-REMOVE_HEIGHT-2*GAP-1;
+               }
+               
+               private Color alterColor(Color c, int inc)
+               {
+                       int nr = Math.min(Math.max(c.getRed()+inc, 0),255);
+                       int ng = Math.min(Math.max(c.getGreen()+inc, 0),255);
+                       int nb = Math.min(Math.max(c.getBlue()+inc, 0),255);
+                       return new Color(nr,ng,nb);
+               }
+
+               public void paintComponent(Graphics g)
+               {
+                       super.paintComponent(g);
+                       Graphics2D g2d = (Graphics2D)  g;
+                       g2d.setRenderingHint(RenderingHints.KEY_ANTIALIASING,
+                                       RenderingHints.VALUE_ANTIALIAS_ON);
+                       int height = getStripeHeight();
+                       double v1 = _mcm.getMinValue();
+                       double v2 = _mcm.getMaxValue();
+                       for (int i=0;i<=getWidth();i++)
+                       {
+                               double ratio = (((double)i)/((double)getWidth()));
+                               double val = v1+(v2-v1)*ratio;
+                               g2d.setColor(_mcm.getColorForValue(val));
+                               g2d.drawLine(i, 0, i, height);  
+                       }
+                       for(int i=0;i<_mcm.getNumColors();i++)
+                       {
+                               double val = _mcm.getValueAt(i);
+                               Color c = _mcm.getColorAt(i);
+                               double norm = (val-_mcm.getMinValue())/(_mcm.getMaxValue()-_mcm.getMinValue());
+                               int x = (int)(norm*(getWidth()-1));
+                               // Target
+                               g2d.setColor(c);
+                               g2d.fillRect(x-TRIGGERS_SEMI_WIDTH+1, 0, 2*TRIGGERS_SEMI_WIDTH-1, getHeight()-1);                                       
+                               g2d.setColor(EDGES);
+                               g2d.drawLine(x-TRIGGERS_SEMI_WIDTH, 0, x-TRIGGERS_SEMI_WIDTH, getHeight());                                     
+                               g2d.drawLine(x+TRIGGERS_SEMI_WIDTH, 0, x+TRIGGERS_SEMI_WIDTH, getHeight());
+                               
+                               if (i==0)
+                               {
+                                       // Choose Color
+                                       g2d.setColor(EDGES);
+                                       g2d.drawRect(x,height+GAP,PALETTE_HEIGHT,2*PALETTE_HEIGHT+GAP);                                 
+                                       g2d.setColor(c);
+                                       g2d.fillRect(x+1,height+GAP+1,PALETTE_HEIGHT-1,2*PALETTE_HEIGHT+GAP-1);
+                               }
+                               else if (i==_mcm.getNumColors()-1)
+                               {
+                                       // Choose Color
+                                       g2d.setColor(EDGES);
+                                       g2d.drawRect(x-PALETTE_HEIGHT,height+GAP,PALETTE_HEIGHT,2*PALETTE_HEIGHT+GAP);                                  
+                                       g2d.setColor(c);
+                                       g2d.fillRect(x-PALETTE_HEIGHT+1,height+GAP+1,PALETTE_HEIGHT-1,2*PALETTE_HEIGHT+GAP-1);                                  
+                               }
+                               else
+                               {
+                               // Choose Color
+                               g2d.setColor(EDGES);
+                               g2d.drawRect(x-PALETTE_HEIGHT/2,height+GAP,PALETTE_HEIGHT,PALETTE_HEIGHT);                                      
+                               g2d.setColor(alterColor(c,-15));
+                               g2d.fillRect(x-PALETTE_HEIGHT/2+1,height+GAP+1,PALETTE_HEIGHT-1,PALETTE_HEIGHT-1);                                      
+                               g2d.setColor(c);
+                               g2d.fillOval(x-PALETTE_HEIGHT/2+1,height+GAP+1,PALETTE_HEIGHT-1,PALETTE_HEIGHT-1);
+                               g2d.setColor(alterColor(c,10));
+                               g2d.fillOval(x-PALETTE_HEIGHT/2+1+2,height+GAP+1+2,PALETTE_HEIGHT-1-4,PALETTE_HEIGHT-1-4);
+
+
+                               // Remove Color
+                               g2d.setColor(EDGES);
+                               g2d.drawRect(x-PALETTE_HEIGHT/2,height+2*GAP+PALETTE_HEIGHT,REMOVE_HEIGHT,REMOVE_HEIGHT);                                       
+                               g2d.setColor(BUTTONS);
+                               g2d.fillRect(x-PALETTE_HEIGHT/2+1,height+2*GAP+1+PALETTE_HEIGHT,REMOVE_HEIGHT-1,REMOVE_HEIGHT-1);                                               
+                               int xcross1 = x-PALETTE_HEIGHT/2+2;
+                               int ycross1 = height+2*GAP+PALETTE_HEIGHT +2;
+                               int xcross2 = xcross1+REMOVE_HEIGHT-4;
+                               int ycross2 = ycross1+REMOVE_HEIGHT-4;
+                               g2d.setColor(Color.red);
+                               g2d.drawLine(xcross1, ycross1, xcross2 , ycross2);                              
+                               g2d.drawLine(xcross1, ycross2, xcross2 , ycross1);
+                               }
+                       }
+
+               }
+               
+               private boolean isChooseColor(int x, int y)
+               {
+                       if (_selectedIndex != -1)
+                       {
+                               if ((_selectedIndex ==0)||(_selectedIndex == _mcm.getNumColors()-1))
+                                       return (y<=getEndRemove() && y>=getStartChoose() && Math.abs(getXPos(_selectedIndex)-x)<=PALETTE_HEIGHT);
+                               if (y<=getEndChoose() && y>=getStartChoose())
+                               {
+                                       return Math.abs(getXPos(_selectedIndex)-x)<=PALETTE_HEIGHT/2;
+                               }
+                       }
+                       return false;
+               }
+               
+               private boolean isRemove(int x, int y)
+               {
+                       if (_selectedIndex != -1)
+                       {
+                               if ((_selectedIndex ==0)||(_selectedIndex == _mcm.getNumColors()-1))
+                                       return false;
+                               if (y<=getEndRemove() && y>=getStartRemove())
+                               {
+                                       return Math.abs(getXPos(_selectedIndex)-x)<=PALETTE_HEIGHT/2;
+                               }
+                       }
+                       return false;
+               }
+               
+               private int getXPos(int i)
+               {
+                       double val = _mcm.getValueAt(i);
+                       double norm = (val-_mcm.getMinValue())/(_mcm.getMaxValue()-_mcm.getMinValue());
+                       return (int)(norm*(getWidth()-1));                      
+               }
+
+               
+               private int locateSelectedIndex(int x, int y)
+               {
+                       double dist = Double.MAX_VALUE;
+                       int index = -1;
+                       for(int i=0;i<_mcm.getNumColors();i++)
+                       {
+                               int xp = getXPos(i);
+                               double tmpDist = Math.abs(x-xp);
+                               if (tmpDist<dist)
+                               {
+                                       index = i;
+                                       dist = tmpDist; 
+                               }
+                       }       
+                       return index;
+               }
+               
+               private int _selectedIndex = -1;
+               
+               public void mouseClicked(MouseEvent arg0) {
+                       _selectedIndex = locateSelectedIndex(arg0.getX(),arg0.getY());
+                       if (_selectedIndex!=-1)
+                       {
+                               if (isRemove(arg0.getX(),arg0.getY()))
+                               {
+                                       removeEntry(_selectedIndex);
+                               }
+                               else if (Math.abs(getXPos(_selectedIndex)-arg0.getX())>TOLERANCE)
+                               {
+                                       double val = _mcm.getMinValue()+ arg0.getX()*(_mcm.getMaxValue()-_mcm.getMinValue())/(getWidth()-1);
+                                       Color nc = JColorChooser.showDialog(this, "Choose new color" ,_mcm.getColorAt(_selectedIndex));
+                                       if (nc != null)
+                                       {
+                                               _mcm.addColor(val, nc);
+                                               repaint();
+                                               firePropertyChange("PaletteChanged","a","b");
+                                       }                                       
+                               }
+                       }
+               }
+
+               public void mouseEntered(MouseEvent arg0) {
+                       // TODO Auto-generated method stub
+                       
+               }
+
+               public void mouseExited(MouseEvent arg0) {
+                       // TODO Auto-generated method stub
+                       
+               }
+
+               public void mousePressed(MouseEvent arg0) {
+                       requestFocus();
+                       _selectedIndex = locateSelectedIndex(arg0.getX(),arg0.getY());
+                       if (_selectedIndex!=-1)
+                       {
+                               if (isChooseColor(arg0.getX(),arg0.getY()))
+                               {
+                                       Color nc = JColorChooser.showDialog(this, "Choose new color" ,_mcm.getColorAt(_selectedIndex));
+                                       if (nc != null)
+                                       {
+                                               double nv = _mcm.getValueAt(_selectedIndex);
+                                               replaceEntry(_selectedIndex, nc, nv);
+                                               _selectedIndex = -1;
+                                       }
+                               }
+                       }
+               }
+
+               public void mouseReleased(MouseEvent arg0) {
+                       _selectedIndex = -1;
+               }
+
+               private void replaceEntry(int index, Color nc, double nv)
+               {
+                       ModeleColorMap cm = new ModeleColorMap();
+                       for(int i=0;i<_mcm.getNumColors();i++)
+                       {
+                               if (i!=index)
+                               {
+                                       double val = _mcm.getValueAt(i);
+                                       Color c = _mcm.getColorAt(i);
+                                       cm.addColor(val, c);
+                               }
+                               else
+                               {
+                                       cm.addColor(nv, nc);
+                               }
+                       }
+                       _mcm = cm;
+                       repaint();
+                       firePropertyChange("PaletteChanged","a","b");
+               }
+
+               private void removeEntry(int index)
+               {
+                       ModeleColorMap cm = new ModeleColorMap();
+                       for(int i=0;i<_mcm.getNumColors();i++)
+                       {
+                               if (i!=index)
+                               {
+                                       double val = _mcm.getValueAt(i);
+                                       Color c = _mcm.getColorAt(i);
+                                       cm.addColor(val, c);
+                               }
+                       }
+                       _mcm = cm;
+                       repaint();
+                       firePropertyChange("PaletteChanged","a","b");
+               }
+               
+               
+               public void mouseDragged(MouseEvent arg0) {
+                       if ((_selectedIndex!=-1)&&(_selectedIndex!=0)&&(_selectedIndex!=_mcm.getNumColors()-1))
+                       {
+                               Color c = _mcm.getColorAt(_selectedIndex);
+                               double val = _mcm.getMinValue()+ arg0.getX()*(_mcm.getMaxValue()-_mcm.getMinValue())/(getWidth()-1);
+                               replaceEntry(_selectedIndex, c, val);
+                       }
+               }
+
+               public void mouseMoved(MouseEvent arg0) {
+                       Cursor c = Cursor.getPredefinedCursor(Cursor.DEFAULT_CURSOR);
+                       _selectedIndex = locateSelectedIndex(arg0.getX(),arg0.getY());
+                       if (_selectedIndex!=-1)
+                       {
+                               if (isChooseColor(arg0.getX(),arg0.getY()))
+                               {
+                                       c = Cursor.getPredefinedCursor(Cursor.HAND_CURSOR);
+                               }
+                               else if ((_selectedIndex != 0)&&(_selectedIndex != _mcm.getNumColors()-1))
+                               {
+                                       if (isRemove(arg0.getX(),arg0.getY()))
+                                       {
+                                               c = Cursor.getPredefinedCursor(Cursor.HAND_CURSOR);                                     
+                                       }
+                                       else if (Math.abs(getXPos(_selectedIndex)-arg0.getX())<=TOLERANCE)
+                                       {
+                                               c = Cursor.getPredefinedCursor(Cursor.E_RESIZE_CURSOR);
+                                       }
+                                       else if (arg0.getY()<getHeight()-this.getStripeHeight())
+                                       {
+                                               c = Cursor.getPredefinedCursor(Cursor.HAND_CURSOR);                                                                             
+                                       }
+                                       else
+                                       {
+                                               Cursor.getPredefinedCursor(Cursor.DEFAULT_CURSOR);
+                                       }
+                               }
+                       }
+                       setCursor(c);
+               }
+       }
+