JAL-3026 srcjar files for VARNA and log4j

[jalview.git] / srcjar / fr / orsay / lri / varna / models / rna / StructureTemp.java

diff --git a/srcjar/fr/orsay/lri/varna/models/rna/StructureTemp.java b/srcjar/fr/orsay/lri/varna/models/rna/StructureTemp.java
new file mode 100644 (file)
index 0000000..40063ba
--- /dev/null
+++ b/srcjar/fr/orsay/lri/varna/models/rna/StructureTemp.java
@@ -0,0 +1,43 @@
+package fr.orsay.lri.varna.models.rna;
+
+import java.io.Serializable;
+import java.util.ArrayList;
+import java.util.Iterator;
+
+public class StructureTemp  implements Serializable{
+       /**
+        * 
+        */
+       private static final long serialVersionUID = -436852923461989105L;
+       private ArrayList<ModeleStrand> _struct = new ArrayList<ModeleStrand>();
+       
+       public StructureTemp(){
+               
+       }
+       
+       public void addStrand(ModeleStrand ms){
+               this._struct.add(ms);
+               
+       }
+       
+       public int sizeStruct() {
+               return this._struct.size();
+       }
+       
+       public ModeleStrand getStrand(int a) {
+               return this._struct.get(a);
+       }
+
+       public ArrayList<ModeleStrand> getListStrands() {
+               return _struct;
+       }
+
+       public void clearListStrands() {
+               this._struct.clear();
+       }
+       
+       public boolean isEmpty() {
+               return this._struct.isEmpty();
+       }
+
+}