Merge branch 'Jalview-JS/develop' into merge/Ben_trying_out_JSdevelop_with_develop

[jalview.git] / srcjar / fr / orsay / lri / varna / models / treealign / AlignedNode.java

diff --git a/srcjar/fr/orsay/lri/varna/models/treealign/AlignedNode.java b/srcjar/fr/orsay/lri/varna/models/treealign/AlignedNode.java
new file mode 100644 (file)
index 0000000..9f42890
--- /dev/null
+++ b/srcjar/fr/orsay/lri/varna/models/treealign/AlignedNode.java
@@ -0,0 +1,48 @@
+package fr.orsay.lri.varna.models.treealign;
+
+
+/**
+ * The type of node values in an alignment.
+ * Contains a reference to both original nodes.
+ * This class implements GraphvizDrawableNodeValue but it will only work
+ * if the original nodes implement it.
+ * @author Raphael Champeimont
+ * @param <OriginalNodeValueType1> The type of values in the original first tree.
+ * @param <OriginalNodeValueType2> The type of values in the original second tree.
+ */
+public class AlignedNode<OriginalNodeValueType1, OriginalNodeValueType2> implements GraphvizDrawableNodeValue {
+       private Tree<OriginalNodeValueType1> leftNode;
+       private Tree<OriginalNodeValueType2> rightNode;
+
+       public Tree<OriginalNodeValueType1> getLeftNode() {
+               return leftNode;
+       }
+
+       public void setLeftNode(Tree<OriginalNodeValueType1> leftNode) {
+               this.leftNode = leftNode;
+       }
+
+       public Tree<OriginalNodeValueType2> getRightNode() {
+               return rightNode;
+       }
+
+       public void setRightNode(Tree<OriginalNodeValueType2> rightNode) {
+               this.rightNode = rightNode;
+       }
+       
+       private String maybeNodeToGraphvizNodeName(Tree <? extends GraphvizDrawableNodeValue> tree) {
+               return (tree != null && tree.getValue() != null) ? tree.getValue().toGraphvizNodeName() : "_";
+       }
+
+       /**
+        * This method will work only if the left and right node
+        * already implement GraphvizDrawableNodeValue.
+        */
+       @SuppressWarnings("unchecked")
+       public String toGraphvizNodeName() {
+               return "(" + maybeNodeToGraphvizNodeName((Tree) leftNode)
+               + "," + maybeNodeToGraphvizNodeName((Tree) rightNode) + ")";
+       }
+
+
+}