Merge branch 'develop' into JAL-1705_trialMerge

[jalview.git] / test / jalview / analysis / AlignmentUtilsTests.java

diff --git a/test/jalview/analysis/AlignmentUtilsTests.java b/test/jalview/analysis/AlignmentUtilsTests.java
index a48db4b..09bd64e 100644 (file)
--- a/test/jalview/analysis/AlignmentUtilsTests.java
+++ b/test/jalview/analysis/AlignmentUtilsTests.java
@@ -989,7 +989,7 @@ public class AlignmentUtilsTests
     assertTrue(AlignmentUtils.haveCrossRef(seq2, seq1));
 
     // now the other way round
-    seq1.setDBRef(null);
+    seq1.setDBRefs(null);
     seq2.addDBRef(new DBRefEntry("EMBL", "1", "A12345"));
     assertTrue(AlignmentUtils.haveCrossRef(seq1, seq2));
     assertTrue(AlignmentUtils.haveCrossRef(seq2, seq1));
@@ -1125,8 +1125,8 @@ public class AlignmentUtilsTests
 
     assertEquals("GGGTTT", cdsSeq.getSequenceAsString());
     assertEquals("dna1|A12345", cdsSeq.getName());
-    assertEquals(1, cdsSeq.getDBRef().length);
-    DBRefEntry cdsRef = cdsSeq.getDBRef()[0];
+    assertEquals(1, cdsSeq.getDBRefs().length);
+    DBRefEntry cdsRef = cdsSeq.getDBRefs()[0];
     assertEquals("EMBLCDS", cdsRef.getSource());
     assertEquals("2", cdsRef.getVersion());
     assertEquals("A12345", cdsRef.getAccessionId());
@@ -1196,8 +1196,8 @@ public class AlignmentUtilsTests
     SequenceI cdsSeq = cds.get(0);
     assertEquals("GGGTTT", cdsSeq.getSequenceAsString());
     assertEquals("dna1|A12345", cdsSeq.getName());
-    assertEquals(1, cdsSeq.getDBRef().length);
-    DBRefEntry cdsRef = cdsSeq.getDBRef()[0];
+    assertEquals(1, cdsSeq.getDBRefs().length);
+    DBRefEntry cdsRef = cdsSeq.getDBRefs()[0];
     assertEquals("EMBLCDS", cdsRef.getSource());
     assertEquals("2", cdsRef.getVersion());
     assertEquals("A12345", cdsRef.getAccessionId());
@@ -1205,8 +1205,8 @@ public class AlignmentUtilsTests
     cdsSeq = cds.get(1);
     assertEquals("aaaccc", cdsSeq.getSequenceAsString());
     assertEquals("dna1|A12346", cdsSeq.getName());
-    assertEquals(1, cdsSeq.getDBRef().length);
-    cdsRef = cdsSeq.getDBRef()[0];
+    assertEquals(1, cdsSeq.getDBRefs().length);
+    cdsRef = cdsSeq.getDBRefs()[0];
     assertEquals("EMBLCDS", cdsRef.getSource());
     assertEquals("3", cdsRef.getVersion());
     assertEquals("A12346", cdsRef.getAccessionId());
@@ -1214,8 +1214,8 @@ public class AlignmentUtilsTests
     cdsSeq = cds.get(2);
     assertEquals("aaaTTT", cdsSeq.getSequenceAsString());
     assertEquals("dna1|A12347", cdsSeq.getName());
-    assertEquals(1, cdsSeq.getDBRef().length);
-    cdsRef = cdsSeq.getDBRef()[0];
+    assertEquals(1, cdsSeq.getDBRefs().length);
+    cdsRef = cdsSeq.getDBRefs()[0];
     assertEquals("EMBLCDS", cdsRef.getSource());
     assertEquals("4", cdsRef.getVersion());
     assertEquals("A12347", cdsRef.getAccessionId());