JAL-2738 use GeneLocus extends DBRefEntry to hold chromosomal mappings

[jalview.git] / test / jalview / analysis / AlignmentUtilsTests.java

diff --git a/test/jalview/analysis/AlignmentUtilsTests.java b/test/jalview/analysis/AlignmentUtilsTests.java
index 70ae6a0..14559dd 100644 (file)
--- a/test/jalview/analysis/AlignmentUtilsTests.java
+++ b/test/jalview/analysis/AlignmentUtilsTests.java
@@ -2684,7 +2684,7 @@ public class AlignmentUtilsTests
      * transcript 'CDS' is 10-16, 17-21
      * which is 'gene' 158-164, 210-214
      */
-    MapList toMap = toLoci.getMap();
+    MapList toMap = toLoci.getMapping();
     assertEquals(1, toMap.getFromRanges().size());
     assertEquals(2, toMap.getFromRanges().get(0).length);
     assertEquals(1, toMap.getFromRanges().get(0)[0]);
@@ -2707,7 +2707,7 @@ public class AlignmentUtilsTests
     AlignmentUtils.transferGeneLoci(from, map, to);
     assertEquals("GRCh38", toLoci.getAssemblyId());
     assertEquals("7", toLoci.getChromosomeId());
-    toMap = toLoci.getMap();
+    toMap = toLoci.getMapping();
     assertEquals("[ [1, 12] ] 1:1 to [ [158, 164] [210, 214] ]",
             toMap.toString());
   }