Merge branch 'trailm' into trial_fixMakeCDSDBRefPropagation

[jalview.git] / test / jalview / analysis / AlignmentUtilsTests.java

diff --git a/test/jalview/analysis/AlignmentUtilsTests.java b/test/jalview/analysis/AlignmentUtilsTests.java
index 2ec2e18..a0ce475 100644 (file)
--- a/test/jalview/analysis/AlignmentUtilsTests.java
+++ b/test/jalview/analysis/AlignmentUtilsTests.java
@@ -997,9 +997,11 @@ public class AlignmentUtilsTests
      * sequence from the dna contig sequences
      */
     DBRefEntry dbref = new DBRefEntry("ENSEMBL", "0", "dna1");
-    dna1.getDatasetSequence().setSourceDBRef(dbref);
+    dna1.getDatasetSequence().addDBRef(dbref);
+    org.testng.Assert.assertEquals(dbref, dna1.getPrimaryDBRefs().get(0));
     dbref = new DBRefEntry("ENSEMBL", "0", "dna2");
-    dna2.getDatasetSequence().setSourceDBRef(dbref);
+    dna2.getDatasetSequence().addDBRef(dbref);
+    org.testng.Assert.assertEquals(dbref, dna2.getPrimaryDBRefs().get(0));
 
     /*
      * CDS sequences are 'discovered' from dna-to-protein mappings on the alignment
@@ -1071,6 +1073,7 @@ public class AlignmentUtilsTests
      * verify peptide has added a dbref with reverse mapping to CDS
      */
     assertNotNull(pep1.getDBRefs());
+    // FIXME pep1.getDBRefs() is 1 - is that the correct behaviour ?
     assertEquals(2, pep1.getDBRefs().length);
     dbref = pep1.getDBRefs()[1];
     assertEquals("ENSEMBL", dbref.getSource());