import static org.testng.Assert.assertEquals;
import static org.testng.Assert.assertNotNull;
+import static org.testng.Assert.assertNotSame;
import static org.testng.Assert.assertTrue;
import static org.testng.internal.junit.ArrayAsserts.assertArrayEquals;
import java.io.IOException;
import java.net.MalformedURLException;
+import java.util.Arrays;
import org.testng.annotations.Test;
}
@Test(groups = "Functional")
+ public void testGetMatrix()
+ {
+ ScoreMatrix sm = ScoreModels.getInstance().getBlosum62();
+ float[][] m = sm.getMatrix();
+ assertEquals(m.length, sm.getSize());
+ assertEquals(m[2][4], -3f);
+ // verify a defensive copy is returned
+ float[][] m2 = sm.getMatrix();
+ assertNotSame(m, m2);
+ assertTrue(Arrays.deepEquals(m, m2));
+ }
+
+ @Test(groups = "Functional")
public void testGetMatrixIndex()
{
ScoreMatrix sm = ScoreModels.getInstance().getBlosum62();
assertNotNull(sm2);
assertTrue(sm2.equals(sm));
}
+
+ @Test(groups = "Functional")
+ public void testEauals()
+ {
+ ScoreMatrix sm = ScoreModels.getInstance().getBlosum62();
+ ScoreMatrix sm2 = new ScoreMatrix(sm.getName(), sm.getSymbols()
+ .toCharArray(), sm.getMatrix());
+ assertTrue(sm.equals(sm2));
+ assertEquals(sm.hashCode(), sm2.hashCode());
+ }
}