JAL-4305 Isolate and unify the Jalview object from all the gubbins in jalview.bin...

[jalview.git] / test / jalview / bin / CommandsTest.java

diff --git a/test/jalview/bin/CommandsTest.java b/test/jalview/bin/CommandsTest.java
index ecec67d..de6185c 100644 (file)
--- a/test/jalview/bin/CommandsTest.java
+++ b/test/jalview/bin/CommandsTest.java
@@ -111,13 +111,13 @@ public class CommandsTest
       Assert.assertEquals(cmds.argsWereParsed(), cmdArgs,
               "Overall command parse and operation is false");
 
-      Assert.assertEquals(Desktop.getAlignFrames().length, numFrames,
+      Assert.assertEquals(Desktop.getDesktopAlignFrames().length, numFrames,
               "Wrong number of AlignFrames");
 
       if (sequences != null)
       {
         Set<String> openedSequenceNames = new HashSet<>();
-        AlignFrame[] afs = Desktop.getAlignFrames();
+        AlignFrame[] afs = Desktop.getDesktopAlignFrames();
         for (AlignFrame af : afs)
         {
           openedSequenceNames.addAll(
@@ -325,7 +325,7 @@ public class CommandsTest
 
   public static boolean lookForSequenceName(String sequenceName)
   {
-    AlignFrame[] afs = Desktop.getAlignFrames();
+    AlignFrame[] afs = Desktop.getDesktopAlignFrames();
     for (AlignFrame af : afs)
     {
       for (String name : af.getViewport().getAlignment().getSequenceNames())