JAL-2089 patch broken merge to master for Release 2.10.0b1

[jalview.git] / test / jalview / datamodel / MappingTest.java

diff --git a/test/jalview/datamodel/MappingTest.java b/test/jalview/datamodel/MappingTest.java
index a295017..b326d90 100644 (file)
--- a/test/jalview/datamodel/MappingTest.java
+++ b/test/jalview/datamodel/MappingTest.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -21,6 +21,7 @@
 package jalview.datamodel;
 
 import static org.testng.AssertJUnit.assertEquals;
+import static org.testng.AssertJUnit.assertSame;
 
 import jalview.util.MapList;
 
@@ -57,4 +58,36 @@ public class MappingTest
     assertEquals("[[1, 6], [11, 13], [15, 20]]", result);
   }
 
+  @Test(groups = { "Functional" })
+  public void testToString()
+  {
+    /*
+     * with no sequence
+     */
+    MapList fk = new MapList(new int[] { 1, 6, 8, 13 }, new int[] { 4, 7 },
+            3, 1);
+    Mapping m = new Mapping(fk);
+    assertEquals("[ [1, 6] [8, 13] ] 3:1 to [ [4, 7] ] ", m.toString());
+
+    /*
+     * with a sequence
+     */
+    SequenceI seq = new Sequence("Seq1", "");
+    m = new Mapping(seq, fk);
+    assertEquals("[ [1, 6] [8, 13] ] 3:1 to [ [4, 7] ] Seq1", m.toString());
+  }
+
+  @Test(groups = { "Functional" })
+  public void testCopyConstructor()
+  {
+    MapList ml = new MapList(new int[] { 1, 6, 8, 13 }, new int[] { 4, 7 },
+            3, 1);
+    SequenceI seq = new Sequence("seq1", "agtacg");
+    Mapping m = new Mapping(seq, ml);
+    m.setMappedFromId("abc");
+    Mapping copy = new Mapping(m);
+    assertEquals("abc", copy.getMappedFromId());
+    assertEquals(ml, copy.getMap());
+    assertSame(seq, copy.getTo());
+  }
 }