Merge branch 'features/JAL-2446NCList' into

[jalview.git] / test / jalview / datamodel / SequenceTest.java

diff --git a/test/jalview/datamodel/SequenceTest.java b/test/jalview/datamodel/SequenceTest.java
index 7d3fdd2..cff4883 100644 (file)
--- a/test/jalview/datamodel/SequenceTest.java
+++ b/test/jalview/datamodel/SequenceTest.java
@@ -35,6 +35,7 @@ import jalview.util.MapList;
 import java.io.File;
 import java.util.ArrayList;
 import java.util.Arrays;
+import java.util.BitSet;
 import java.util.List;
 import java.util.Vector;
 
@@ -76,6 +77,18 @@ public class SequenceTest
     assertEquals("Gap interval 1 end wrong", 4, gapInt.get(0)[1]);
     assertEquals("Gap interval 2 start wrong", 6, gapInt.get(1)[0]);
     assertEquals("Gap interval 2 end wrong", 8, gapInt.get(1)[1]);
+
+    BitSet gapfield = aseq.getInsertionsAsBits();
+    BitSet expectedgaps = new BitSet();
+    expectedgaps.set(2, 5);
+    expectedgaps.set(6, 9);
+
+    assertEquals(6, expectedgaps.cardinality());
+
+    assertEquals("getInsertionsAsBits didn't mark expected number of gaps",
+            6, gapfield.cardinality());
+
+    assertEquals("getInsertionsAsBits not correct.", expectedgaps, gapfield);
   }
 
   @Test(groups = ("Functional"))