Merge branch 'develop' into bug/JAL-2346annotationChoice

[jalview.git] / test / jalview / ext / rbvi / chimera / AtomSpecModelTest.java

diff --git a/test/jalview/ext/rbvi/chimera/AtomSpecModelTest.java b/test/jalview/ext/rbvi/chimera/AtomSpecModelTest.java
new file mode 100644 (file)
index 0000000..c9e1cad
--- /dev/null
+++ b/test/jalview/ext/rbvi/chimera/AtomSpecModelTest.java
@@ -0,0 +1,34 @@
+package jalview.ext.rbvi.chimera;
+
+import static org.testng.Assert.assertEquals;
+
+import org.testng.annotations.Test;
+
+public class AtomSpecModelTest
+{
+  @Test(groups = "Functional")
+  public void testGetAtomSpec()
+  {
+    AtomSpecModel model = new AtomSpecModel();
+    assertEquals(model.getAtomSpec(), "");
+    model.addRange(1, 2, 4, "A");
+    assertEquals(model.getAtomSpec(), "#1:2-4.A");
+    model.addRange(1, 8, 8, "A");
+    assertEquals(model.getAtomSpec(), "#1:2-4.A,8.A");
+    model.addRange(1, 5, 7, "B");
+    assertEquals(model.getAtomSpec(), "#1:2-4.A,8.A,5-7.B");
+    model.addRange(1, 3, 5, "A");
+    assertEquals(model.getAtomSpec(), "#1:2-5.A,8.A,5-7.B");
+    model.addRange(0, 1, 4, "B");
+    assertEquals(model.getAtomSpec(), "#0:1-4.B|#1:2-5.A,8.A,5-7.B");
+    model.addRange(0, 5, 9, "C");
+    assertEquals(model.getAtomSpec(), "#0:1-4.B,5-9.C|#1:2-5.A,8.A,5-7.B");
+    model.addRange(1, 8, 10, "B");
+    assertEquals(model.getAtomSpec(), "#0:1-4.B,5-9.C|#1:2-5.A,8.A,5-10.B");
+    model.addRange(1, 8, 9, "B");
+    assertEquals(model.getAtomSpec(), "#0:1-4.B,5-9.C|#1:2-5.A,8.A,5-10.B");
+    model.addRange(0, 3, 10, "C"); // subsumes 5-9
+    assertEquals(model.getAtomSpec(), "#0:1-4.B,3-10.C|#1:2-5.A,8.A,5-10.B");
+  }
+
+}