+++ /dev/null
-/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- */
-package jalview.fts.core;
-
-import jalview.fts.api.FTSDataColumnI;
-import jalview.fts.api.FTSDataColumnI.FTSDataColumnGroupI;
-import jalview.gui.JvOptionPane;
-
-import java.util.Collection;
-import java.util.HashSet;
-import java.util.Set;
-
-import org.testng.Assert;
-import org.testng.annotations.BeforeClass;
-import org.testng.annotations.BeforeMethod;
-import org.testng.annotations.Test;
-
-public class FTSRestClientTest
-{
-
- @BeforeClass(alwaysRun = true)
- public void setUpJvOptionPane()
- {
- JvOptionPane.setInteractiveMode(false);
- JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
- }
-
- private FTSRestClient ftsRestClient;
-
- @BeforeMethod(alwaysRun = true)
- public void setup()
- {
- ftsRestClient = new FTSRestClient()
- {
-
- @Override
- public String getColumnDataConfigFileName()
- {
- return "/fts/uniprot_data_columns.txt";
- }
-
- @Override
- public FTSRestResponse executeRequest(FTSRestRequest ftsRequest)
- throws Exception
- {
- return null;
- }
- };
- }
-
- @Test(groups = { "Functional" })
- public void getPrimaryKeyColumIndexTest()
- {
- Collection<FTSDataColumnI> wantedFields = ftsRestClient
- .getAllDefaultDisplayedFTSDataColumns();
- int foundIndex = -1;
- try
- {
- Assert.assertEquals(foundIndex, -1);
- foundIndex = ftsRestClient.getPrimaryKeyColumIndex(wantedFields,
- false);
- Assert.assertEquals(foundIndex, 0);
- foundIndex = ftsRestClient
- .getPrimaryKeyColumIndex(wantedFields, true);
- Assert.assertEquals(foundIndex, 1);
- } catch (Exception e)
- {
- e.printStackTrace();
- Assert.fail("Exception thrown while testing...");
- }
- }
-
- @Test(groups = { "Functional" })
- public void getAllDefaulDisplayedDataColumns()
- {
- Assert.assertNotNull(ftsRestClient
- .getAllDefaultDisplayedFTSDataColumns());
- Assert.assertTrue(!ftsRestClient.getAllDefaultDisplayedFTSDataColumns()
- .isEmpty());
- Assert.assertEquals(ftsRestClient
- .getAllDefaultDisplayedFTSDataColumns().size(), 7);
- }
-
- @Test(groups = { "Functional" })
- public void getDataColumnsFieldsAsCommaDelimitedString()
- {
- Collection<FTSDataColumnI> wantedFields = ftsRestClient
- .getAllDefaultDisplayedFTSDataColumns();
- String actual = ftsRestClient
- .getDataColumnsFieldsAsCommaDelimitedString(wantedFields);
- Assert.assertEquals(actual,
- "id,entry name,protein names,genes,organism,reviewed,length");
- }
-
- @Test(groups = { "Functional" })
- public void getAllFTSDataColumns()
- {
- Collection<FTSDataColumnI> allFields = ftsRestClient
- .getAllFTSDataColumns();
- Assert.assertNotNull(allFields);
- Assert.assertEquals(allFields.size(), 117);
- }
-
- @Test(groups = { "Functional" })
- public void getSearchableDataColumns()
- {
- Collection<FTSDataColumnI> searchalbeFields = ftsRestClient
- .getSearchableDataColumns();
- Assert.assertNotNull(searchalbeFields);
- Assert.assertEquals(searchalbeFields.size(), 22);
- }
-
- @Test(groups = { "Functional" })
- public void getPrimaryKeyColumn()
- {
- FTSDataColumnI expectedPKColumn;
- try
- {
- expectedPKColumn = ftsRestClient
- .getDataColumnByNameOrCode("Uniprot Id");
- Assert.assertNotNull(ftsRestClient.getPrimaryKeyColumn());
- Assert.assertEquals(ftsRestClient.getPrimaryKeyColumn(),
- expectedPKColumn);
- } catch (Exception e)
- {
- e.printStackTrace();
- Assert.fail("Exception thrown while testing...");
- }
- }
-
- @Test(groups = { "Functional" })
- public void getDataColumnByNameOrCode()
- {
- try
- {
- FTSDataColumnI foundDataCol = ftsRestClient
- .getDataColumnByNameOrCode("genes");
- Assert.assertNotNull(foundDataCol);
- Assert.assertEquals(foundDataCol.getName(), "Gene Names");
- } catch (Exception e)
- {
- e.printStackTrace();
- Assert.fail("Exception thrown while testing...");
- }
- }
-
- @Test(groups = { "Functional" })
- public void getDataColumnGroupById()
- {
- FTSDataColumnGroupI foundDataColGroup;
- try
- {
- foundDataColGroup = ftsRestClient.getDataColumnGroupById("g3");
- Assert.assertNotNull(foundDataColGroup);
- Assert.assertEquals(foundDataColGroup.getName(), "Names & Taxonomy");
- } catch (Exception e)
- {
- e.printStackTrace();
- }
- }
-
- @Test(groups = { "Functional" })
- public void getDefaultResponsePageSize()
- {
- int defaultResSize = ftsRestClient.getDefaultResponsePageSize();
- Assert.assertEquals(defaultResSize, 500);
- }
-
- @Test(groups = { "Functional" })
- public void getColumnMinWidthTest()
- {
- try
- {
- FTSDataColumnI foundDataCol = ftsRestClient
- .getDataColumnByNameOrCode("Protein names");
- Assert.assertNotNull(foundDataCol);
- int actualColMinWidth = foundDataCol.getMinWidth();
- Assert.assertEquals(actualColMinWidth, 300);
- } catch (Exception e)
- {
- e.printStackTrace();
- Assert.fail("Exception thrown while testing...");
- }
- }
-
- @Test(groups = { "Functional" })
- public void getColumnMaxWidthTest()
- {
- try
- {
- FTSDataColumnI foundDataCol = ftsRestClient
- .getDataColumnByNameOrCode("Protein names");
- Assert.assertNotNull(foundDataCol);
- int actualColMinWidth = foundDataCol.getMaxWidth();
- Assert.assertEquals(actualColMinWidth, 1500);
- } catch (Exception e)
- {
- e.printStackTrace();
- Assert.fail("Exception thrown while testing...");
- }
- }
-
- @Test(groups = { "Functional" })
- public void getColumnPreferredWidthTest()
- {
- try
- {
- FTSDataColumnI foundDataCol = ftsRestClient
- .getDataColumnByNameOrCode("Protein names");
- Assert.assertNotNull(foundDataCol);
- int actualColMinWidth = foundDataCol.getPreferredWidth();
- Assert.assertEquals(actualColMinWidth, 500);
- } catch (Exception e)
- {
- e.printStackTrace();
- Assert.fail("Exception thrown while testing...");
- }
- }
-
- @Test(groups = { "Functional" })
- public void getColumnClassTest()
- {
- try
- {
- FTSDataColumnI foundDataCol = ftsRestClient
- .getDataColumnByNameOrCode("Protein names");
- Assert.assertNotNull(foundDataCol);
- Assert.assertEquals(foundDataCol.getDataType().getDataTypeClass(),
- String.class);
- foundDataCol = ftsRestClient.getDataColumnByNameOrCode("length");
- Assert.assertNotNull(foundDataCol);
- Assert.assertEquals(foundDataCol.getDataType().getDataTypeClass(),
- Integer.class);
- // foundDataCol = ftsRestClient.getDataColumnByNameOrCode("length");
- // Assert.assertNotNull(foundDataCol);
- // Assert.assertEquals(foundDataCol.getDataColumnClass(), Double.class);
- } catch (Exception e)
- {
- e.printStackTrace();
- Assert.fail("Exception thrown while testing...");
- }
- }
-
- @Test(groups = { "Functional" })
- public void coverageForEqualsAndHashFunction()
- {
- Set<FTSDataColumnI> uniqueSet = new HashSet<FTSDataColumnI>();
- Collection<FTSDataColumnI> searchableCols = ftsRestClient
- .getSearchableDataColumns();
- for (FTSDataColumnI foundCol : searchableCols)
- {
- System.out.println(foundCol.toString());
- uniqueSet.add(foundCol);
- uniqueSet.add(foundCol);
- }
- Assert.assertTrue(!uniqueSet.isEmpty());
- Assert.assertEquals(uniqueSet.size(), 22);
- }
-
- @Test(groups = { "Functional" })
- public void coverageForMiscellaneousBranches()
- {
- String actual = ftsRestClient.getPrimaryKeyColumn().toString();
- Assert.assertEquals(actual, "Uniprot Id");
-
- String actualGroupStr;
- try
- {
- actualGroupStr = ftsRestClient.getDataColumnGroupById("g4")
- .toString();
- Assert.assertEquals(actualGroupStr, "Procedures & Softwares");
- actualGroupStr = ftsRestClient.getDataColumnGroupById(
- "unavailable group").toString();
- } catch (Exception e)
- {
- Assert.assertTrue(true);
- }
-
- String actualResourseFile = ftsRestClient
- .getResourceFile("/fts/uniprot_data_columns.txt");
- Assert.assertNotNull(actualResourseFile);
- Assert.assertTrue(actualResourseFile.length() > 31);
- }
-
- @Test(groups = { "Functional" }, expectedExceptions = Exception.class)
- public void coverageForExceptionBranches() throws Exception
- {
- try
- {
- ftsRestClient.getDataColumnByNameOrCode("unavailable column");
- } catch (Exception e)
- {
- System.out.println(e.getMessage());
- String expectedMessage = "Couldn't find data column with name : unavailable column";
- Assert.assertEquals(e.getMessage(), expectedMessage);
- }
- try
- {
- ftsRestClient.getDataColumnGroupById("unavailable column group Id");
- } catch (Exception e)
- {
- System.out.println(e.getMessage());
- String expectedMessage = "Couldn't find data column group with id : unavailable column group Id";
- Assert.assertEquals(e.getMessage(), expectedMessage);
- }
-
- ftsRestClient.getDataColumnByNameOrCode("unavailable column");
-
- ftsRestClient.getResourceFile("unavailable resource file");
-
- }
-
-}
git://source.jalview.org / jalview.git / blobdiff