Merge branch 'develop' into patch/JAL-4281_idwidthandannotHeight_in_project

[jalview.git] / test / jalview / fts / threedbeacons / q99814_tdb_pdbfts_query_resp.txt

diff --git a/test/jalview/fts/threedbeacons/q99814_tdb_pdbfts_query_resp.txt b/test/jalview/fts/threedbeacons/q99814_tdb_pdbfts_query_resp.txt
new file mode 100644 (file)
index 0000000..a69d63a
--- /dev/null
+++ b/test/jalview/fts/threedbeacons/q99814_tdb_pdbfts_query_resp.txt
@@ -0,0 +1,354 @@
+{
+  "responseHeader":{
+    "status":0,
+    "QTime":0,
+    "params":{
+      "q":"(4gs9 OR 6bvb OR 8ck8 OR 8ck3 OR 6x3d OR 8ck4 OR 6x28 OR 6i7r OR 3h82 OR 6i7q OR 6x21 OR 4xt2 OR 5kiz OR 7q5v OR 6x2h OR 7q5x OR 3f1n OR 3f1o OR 2a24 OR 3f1p OR 1p97 OR 4ghi OR 3h7w OR 6d09 OR 6czw OR 7ujv OR 5tbm OR 5ufp OR 4pky OR 6d0b OR 6d0c OR 6x37) AND molecule_sequence:['' TO *] AND status:REL",
+      "fl":"pdb_id,title,experimental_method,resolution",
+      "start":"0",
+      "sort":"",
+      "rows":"500",
+      "wt":"json"}},
+  "response":{"numFound":69,"start":0,"docs":[
+      {
+        "experimental_method":["Solution NMR"],
+        "pdb_id":"1p97",
+        "title":"NMR structure of the C-terminal PAS domain of HIF2a"},
+      {
+        "experimental_method":["Solution NMR"],
+        "pdb_id":"5kiz",
+        "title":"Solution Structure of a repacked version of HIF-2 alpha PAS-B"},
+      {
+        "experimental_method":["Solution NMR"],
+        "pdb_id":"2a24",
+        "title":"HADDOCK Structure of HIF-2a/ARNT PAS-B Heterodimer"},
+      {
+        "experimental_method":["Solution NMR"],
+        "pdb_id":"2a24",
+        "title":"HADDOCK Structure of HIF-2a/ARNT PAS-B Heterodimer"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6x28",
+        "resolution":1.92,
+        "title":"Crystal structure of PT2243 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6x2h",
+        "resolution":2.0,
+        "title":"Crystal structure of PT2863 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6d0c",
+        "resolution":1.5,
+        "title":"Crystal structure of HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6d0c",
+        "resolution":1.5,
+        "title":"Crystal structure of HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6x28",
+        "resolution":1.92,
+        "title":"Crystal structure of PT2243 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6x3d",
+        "resolution":2.0,
+        "title":"Crystal structure of PT3388 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6x3d",
+        "resolution":2.0,
+        "title":"Crystal structure of PT3388 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6x37",
+        "resolution":1.94,
+        "title":"Crystal structure of PT3245 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6x37",
+        "resolution":1.94,
+        "title":"Crystal structure of PT3245 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6x21",
+        "resolution":1.54,
+        "title":"Crystal structure of PT1673 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6x21",
+        "resolution":1.54,
+        "title":"Crystal structure of PT1673 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6x2h",
+        "resolution":2.0,
+        "title":"Crystal structure of PT2863 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6d0b",
+        "resolution":1.6,
+        "title":"Crystal structure of PT1614 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6d09",
+        "resolution":1.85,
+        "title":"Crystal structure of PT2440 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6czw",
+        "resolution":1.6,
+        "title":"Crystal structure of PT1940 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"8ck8",
+        "resolution":2.302,
+        "title":"STRUCTURE OF HIF2A-ARNT HETERODIMER IN COMPLEX WITH (S)-1-Cyclohexyloxy-5,5-difluoro-3-methanesulfonyl-5,6-dihydro-4H-cyclopenta[c]thiophen-4-ol"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"8ck4",
+        "resolution":2.29,
+        "title":"STRUCTURE OF HIF2A-ARNT HETERODIMER IN COMPLEX WITH (4S)-1-(3,5-difluorophenyl)-5,5-difluoro-3-methanesulfonyl-4,5,6,7-tetrahydro-2-benzothiophen-4-ol"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"8ck4",
+        "resolution":2.29,
+        "title":"STRUCTURE OF HIF2A-ARNT HETERODIMER IN COMPLEX WITH (4S)-1-(3,5-difluorophenyl)-5,5-difluoro-3-methanesulfonyl-4,5,6,7-tetrahydro-2-benzothiophen-4-ol"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"8ck8",
+        "resolution":2.302,
+        "title":"STRUCTURE OF HIF2A-ARNT HETERODIMER IN COMPLEX WITH (S)-1-Cyclohexyloxy-5,5-difluoro-3-methanesulfonyl-5,6-dihydro-4H-cyclopenta[c]thiophen-4-ol"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"4xt2",
+        "resolution":1.698,
+        "title":"Crystal structure of the high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains in complex with a tetrazole-containing antagonist"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"3h82",
+        "resolution":1.5,
+        "title":"Crystal structure of the high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains with the artificial ligand THS020"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"3h7w",
+        "resolution":1.65,
+        "title":"Crystal structure of the high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains with the artificial ligand THS017"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"3f1p",
+        "resolution":1.17,
+        "title":"Crystal structure of a high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"3f1p",
+        "resolution":1.17,
+        "title":"Crystal structure of a high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6d0b",
+        "resolution":1.6,
+        "title":"Crystal structure of PT1614 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6d09",
+        "resolution":1.85,
+        "title":"Crystal structure of PT2440 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6czw",
+        "resolution":1.6,
+        "title":"Crystal structure of PT1940 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"4xt2",
+        "resolution":1.698,
+        "title":"Crystal structure of the high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains in complex with a tetrazole-containing antagonist"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"5tbm",
+        "resolution":1.85,
+        "title":"Crystal structure of PT2385 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"3h82",
+        "resolution":1.5,
+        "title":"Crystal structure of the high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains with the artificial ligand THS020"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"4gs9",
+        "resolution":1.72,
+        "title":"Crystal structure of the high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains in complex with an inactive benzoxadiazole antagonist"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"4ghi",
+        "resolution":1.5,
+        "title":"Crystal structure of the high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains in complex with a benzoxadiazole antagonist"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"4ghi",
+        "resolution":1.5,
+        "title":"Crystal structure of the high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains in complex with a benzoxadiazole antagonist"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"3h7w",
+        "resolution":1.65,
+        "title":"Crystal structure of the high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains with the artificial ligand THS017"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"3f1n",
+        "resolution":1.479,
+        "title":"Crystal structure of a high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains, with internally bound ethylene glycol."},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"3f1n",
+        "resolution":1.479,
+        "title":"Crystal structure of a high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains, with internally bound ethylene glycol."},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"3f1o",
+        "resolution":1.598,
+        "title":"Crystal structure of the high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains, with an internally-bound artificial ligand"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"3f1o",
+        "resolution":1.598,
+        "title":"Crystal structure of the high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains, with an internally-bound artificial ligand"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"7ujv",
+        "resolution":1.8,
+        "title":"Structure of PHD2 in complex with HIF2a-CODD"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"8ck3",
+        "resolution":1.707,
+        "title":"STRUCTURE OF HIF2A-ARNT HETERODIMER IN COMPLEX WITH (S)-1-(3,5-Difluoro-phenyl)-5,5-difluoro-3-methanesulfonyl-5,6-dihydro-4H-cyclopenta[c]thiophen-4-ol"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"8ck3",
+        "resolution":1.707,
+        "title":"STRUCTURE OF HIF2A-ARNT HETERODIMER IN COMPLEX WITH (S)-1-(3,5-Difluoro-phenyl)-5,5-difluoro-3-methanesulfonyl-5,6-dihydro-4H-cyclopenta[c]thiophen-4-ol"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"4gs9",
+        "resolution":1.72,
+        "title":"Crystal structure of the high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains in complex with an inactive benzoxadiazole antagonist"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"5tbm",
+        "resolution":1.85,
+        "title":"Crystal structure of PT2385 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"5ufp",
+        "resolution":1.9,
+        "title":"Crystal structure of PT2399 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"5ufp",
+        "resolution":1.9,
+        "title":"Crystal structure of PT2399 bound to HIF2a-B*:ARNT-B* complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"4pky",
+        "resolution":3.2,
+        "title":"ARNT/HIF transcription factor/coactivator complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6bvb",
+        "resolution":2.002,
+        "title":"Crystal structure of HIF-2alpha-pVHL-elongin B-elongin C"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"4pky",
+        "resolution":3.2,
+        "title":"ARNT/HIF transcription factor/coactivator complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"4pky",
+        "resolution":3.2,
+        "title":"ARNT/HIF transcription factor/coactivator complex"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6i7q",
+        "resolution":1.798,
+        "title":"Structure of pVHL-elongin B-elongin C (VCB) in complex with hydroxylated-HIF-2alpha (523-542) in the C2221 form"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6i7r",
+        "resolution":1.949,
+        "title":"Structure of pVHL-elongin B-elongin C (VCB) in complex with hydroxylated-HIF-2alpha (523-542) in the P43212 form"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"7ujv",
+        "resolution":1.8,
+        "title":"Structure of PHD2 in complex with HIF2a-CODD"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"7q5v",
+        "resolution":1.17,
+        "title":"HIF PROLYL HYDROXYLASE 2 (PHD2/EGLN1) IN COMPLEX WITH N-OXALYLGLYCINE (NOG) AND HIF-2 ALPHA CODD (523-542)"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"7q5x",
+        "resolution":1.21,
+        "title":"HIF PROLYL HYDROXYLASE 2 (PHD2/EGLN1) IN COMPLEX WITH 2-OXOGLUTARATE (2OG) AND HIF-2 ALPHA CODD (523-542)"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"7q5v",
+        "resolution":1.17,
+        "title":"HIF PROLYL HYDROXYLASE 2 (PHD2/EGLN1) IN COMPLEX WITH N-OXALYLGLYCINE (NOG) AND HIF-2 ALPHA CODD (523-542)"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6bvb",
+        "resolution":2.002,
+        "title":"Crystal structure of HIF-2alpha-pVHL-elongin B-elongin C"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"7q5x",
+        "resolution":1.21,
+        "title":"HIF PROLYL HYDROXYLASE 2 (PHD2/EGLN1) IN COMPLEX WITH 2-OXOGLUTARATE (2OG) AND HIF-2 ALPHA CODD (523-542)"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6i7r",
+        "resolution":1.949,
+        "title":"Structure of pVHL-elongin B-elongin C (VCB) in complex with hydroxylated-HIF-2alpha (523-542) in the P43212 form"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6i7q",
+        "resolution":1.798,
+        "title":"Structure of pVHL-elongin B-elongin C (VCB) in complex with hydroxylated-HIF-2alpha (523-542) in the C2221 form"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6bvb",
+        "resolution":2.002,
+        "title":"Crystal structure of HIF-2alpha-pVHL-elongin B-elongin C"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6i7r",
+        "resolution":1.949,
+        "title":"Structure of pVHL-elongin B-elongin C (VCB) in complex with hydroxylated-HIF-2alpha (523-542) in the P43212 form"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6i7q",
+        "resolution":1.798,
+        "title":"Structure of pVHL-elongin B-elongin C (VCB) in complex with hydroxylated-HIF-2alpha (523-542) in the C2221 form"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6bvb",
+        "resolution":2.002,
+        "title":"Crystal structure of HIF-2alpha-pVHL-elongin B-elongin C"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6i7q",
+        "resolution":1.798,
+        "title":"Structure of pVHL-elongin B-elongin C (VCB) in complex with hydroxylated-HIF-2alpha (523-542) in the C2221 form"},
+      {
+        "experimental_method":["X-ray diffraction"],
+        "pdb_id":"6i7r",
+        "resolution":1.949,
+        "title":"Structure of pVHL-elongin B-elongin C (VCB) in complex with hydroxylated-HIF-2alpha (523-542) in the P43212 form"}]
+  }}