* Test for JAL-1306 - conservation thread should run even when only Quality
* (and not Conservation) is enabled in Preferences
*/
- @Test(groups = { "Functional" }, timeOut = 2000) // BH removed timeOut=2000
+ @Test(groups = { "Functional" }, timeOut = 2000)
public void testUpdateConservation_qualityOnly()
{
Cache.setPropertyNoSave("SHOW_ANNOTATIONS",
AlignViewport viewport = af.getViewport();
synchronized (this)
{
- System.out.println("AVT consv: "
- + viewport.getAlignmentConservationAnnotation());
+ // System.out.println("AVT consv: "
+ // + viewport.getAlignmentConservationAnnotation());
try
{
wait(250); // BH increased from 50 -- was getting Quality in column 1
} catch (InterruptedException e)
{
}
- System.out.println("AVT consv: "
- + viewport.getAlignmentConservationAnnotation());
+ // System.out.println("AVT consv: "
+ // + viewport.getAlignmentConservationAnnotation());
while (viewport.getAlignmentConservationAnnotation() != null)
{
try
// af.paintImmediately(af.getBounds());
AlignViewport testme = af.getViewport();
SequenceI cons = testme.getConsensusSeq();
- System.out.println("AVT " + cons.getSequenceAsString());
+ // System.out.println("AVT " + cons.getSequenceAsString());
assertEquals("A-C", cons.getSequenceAsString());
}