JAL-1712 fixes/tests for Castor binding of EMBL XML / show flanking

[jalview.git] / test / jalview / io / AnnotatedPDBFileInputTest.java

diff --git a/test/jalview/io/AnnotatedPDBFileInputTest.java b/test/jalview/io/AnnotatedPDBFileInputTest.java
index 29d5549..6a61d2c 100644 (file)
--- a/test/jalview/io/AnnotatedPDBFileInputTest.java
+++ b/test/jalview/io/AnnotatedPDBFileInputTest.java
@@ -4,6 +4,14 @@ import static org.junit.Assert.assertEquals;
 import static org.junit.Assert.assertNotEquals;
 import static org.junit.Assert.assertNotNull;
 import static org.junit.Assert.assertTrue;
+
+import java.io.File;
+
+import org.junit.AfterClass;
+import org.junit.Before;
+import org.junit.BeforeClass;
+import org.junit.Test;
+
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.PDBEntry;
@@ -14,14 +22,6 @@ import jalview.gui.Desktop;
 import jalview.structure.StructureMapping;
 import jalview.structure.StructureSelectionManager;
 
-import java.io.File;
-import java.util.Vector;
-
-import org.junit.AfterClass;
-import org.junit.Before;
-import org.junit.BeforeClass;
-import org.junit.Test;
-
 public class AnnotatedPDBFileInputTest
 {
 
@@ -38,8 +38,8 @@ public class AnnotatedPDBFileInputTest
     AlignFrame af = loader.LoadFileWaitTillLoaded(pdbStr,
             FormatAdapter.FILE);
     al = af.getViewport().getAlignment();
-    pdbId = ((PDBEntry) al.getSequenceAt(0).getDatasetSequence().getPDBId()
-            .get(0)).getId();
+    pdbId = al.getSequenceAt(0).getDatasetSequence().getPDBId()
+            .get(0).getId();
   }
 
   @Test
@@ -194,7 +194,7 @@ public class AnnotatedPDBFileInputTest
       }
       assertNotNull(sq.getPDBId());
       assertEquals("Expected only one PDB ID", sq.getPDBId().size(), 1);
-      for (PDBEntry pdbentry : (Vector<PDBEntry>) sq.getPDBId())
+      for (PDBEntry pdbentry : sq.getPDBId())
       {
         System.err.println("PDB Entry " + pdbentry.getId() + " "
                 + pdbentry.getFile());