JAL-4342 test and patch checking annotation csv export contains the annotations on...

[jalview.git] / test / jalview / io / AnnotationExporterTest.java

diff --git a/test/jalview/io/AnnotationExporterTest.java b/test/jalview/io/AnnotationExporterTest.java
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+++ b/test/jalview/io/AnnotationExporterTest.java
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+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.io;
+
+import static org.testng.Assert.assertFalse;
+import static org.testng.Assert.assertTrue;
+import static org.testng.AssertJUnit.assertNotNull;
+
+import org.testng.annotations.BeforeClass;
+import org.testng.annotations.Test;
+
+import jalview.datamodel.AlignmentAnnotation;
+import jalview.gui.AlignFrame;
+import jalview.gui.AnnotationExporter;
+import jalview.gui.JvOptionPane;
+
+public class AnnotationExporterTest
+{
+
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
+  @Test(groups = "Functional")
+  public void testAnnotationExportAsCSV()
+  {
+    /*
+     * JAL-4342 test that export all alignment annotation as CSV or as an annotations file DOES NOT produce empty text box/file
+     */
+    AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(
+            ">Seq1\nQRSIL\n>Seq2\nFTHND\n>Seq3\nRPVSL\n",
+            DataSourceType.PASTE);
+    AlignmentAnnotation[] annots = af.alignPanel.getAlignment()
+            .getAlignmentAnnotation();
+
+    assertTrue(annots.length > 1);
+    // set up exporter
+    AnnotationExporter ae = new AnnotationExporter(af.alignPanel);
+    ae.exportAnnotations();
+    ae.setExportAsCSV();
+
+    String exported;
+    exported = ae.getAnnotationsText();
+    assertNotNull(exported);
+    assertTrue(exported.contains(annots[0].label));
+    assertTrue(exported.contains(annots[1].label));
+
+    // just one annotation row
+    ae.exportAnnotation(annots[1]);
+    exported = ae.getAnnotationsText();
+    assertNotNull(exported);
+    assertFalse(exported.contains(annots[0].label));
+    assertTrue(exported.contains(annots[1].label));
+
+  }
+}