JAL-3210 Barebones gradle/buildship/eclipse. See README

[jalview.git] / test / jalview / io / BioJsHTMLOutputTest.java

diff --git a/test/jalview/io/BioJsHTMLOutputTest.java b/test/jalview/io/BioJsHTMLOutputTest.java
deleted file mode 100644 (file)
index 24e6cf7..0000000
--- a/test/jalview/io/BioJsHTMLOutputTest.java
+++ /dev/null
@@ -1,161 +0,0 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *  
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License
- * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- */
-package jalview.io;
-
-import jalview.gui.JvOptionPane;
-import jalview.json.binding.biojs.BioJSReleasePojo;
-import jalview.json.binding.biojs.BioJSRepositoryPojo;
-
-import java.io.File;
-import java.io.IOException;
-import java.net.MalformedURLException;
-import java.net.URISyntaxException;
-import java.net.URL;
-import java.net.URLConnection;
-import java.util.TreeMap;
-
-import org.testng.Assert;
-import org.testng.AssertJUnit;
-import org.testng.annotations.BeforeClass;
-import org.testng.annotations.Test;
-
-public class BioJsHTMLOutputTest
-{
-
-  @BeforeClass(alwaysRun = true)
-  public void setUpJvOptionPane()
-  {
-    JvOptionPane.setInteractiveMode(false);
-    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
-  }
-
-  @Test(groups = { "Functional" })
-  public void getJalviewAlignmentAsJsonString()
-  {
-    String bjsTemplate = null;
-    try
-    {
-      BioJsHTMLOutput.updateBioJS();
-      try
-      {
-        // allow the update some three seconds to complete before getting latest
-        // version of BioJS template
-        Thread.sleep(1000 * 3);
-      } catch (InterruptedException e)
-      {
-        e.printStackTrace();
-      }
-      bjsTemplate = HTMLOutput.readFileAsString(BioJsHTMLOutput
-              .getCurrentBJSTemplateFile());
-      // System.out.println(bjsTemplate);
-    } catch (IOException e)
-    {
-      e.printStackTrace();
-    }
-    Assert.assertNotNull(bjsTemplate);
-  }
-
-  @Test(
-    groups = { "Functional" },
-    expectedExceptions = NullPointerException.class)
-  public void expectedNullPointerException()
-  {
-    try
-    {
-      BioJsHTMLOutput.refreshVersionInfo(null);
-    } catch (URISyntaxException e)
-    {
-      AssertJUnit.fail("Expception occured while testing!");
-      e.printStackTrace();
-    }
-  }
-
-  @Test(groups = { "Functional" })
-  public void getBioJsMSAVersions()
-  {
-    TreeMap<String, File> versions = null;
-    try
-    {
-      BioJsHTMLOutput
-              .refreshVersionInfo(BioJsHTMLOutput.BJS_TEMPLATES_LOCAL_DIRECTORY);
-      versions = BioJsHTMLOutput.getBioJsMSAVersions();
-    } catch (URISyntaxException e)
-    {
-      AssertJUnit.fail("Expception occured while testing!");
-      e.printStackTrace();
-    }
-    AssertJUnit.assertNotNull("No versions found", versions);
-    AssertJUnit.assertTrue("One or more Templates required",
-            versions.size() > 0);
-    System.out
-            .println("Number of discovered versions : " + versions.size());
-    for (String v : versions.keySet())
-    {
-      System.out.println("version : " + v);
-      System.out.println("File : " + versions.get(v));
-    }
-
-    System.out.println("\nCurrent latest version : "
-            + BioJsHTMLOutput.getCurrentBJSTemplateFile());
-    AssertJUnit.assertNotNull("Latest BioJsMSA version NOT found!",
-            BioJsHTMLOutput.getCurrentBJSTemplateFile());
-
-  }
-
-  @Test(groups = { "Network" })
-  public void testBioJsUpdate()
-  {
-    String url = BioJsHTMLOutput.BJS_TEMPLATE_GIT_REPO;
-    AssertJUnit
-            .assertTrue("URL not reacable : " + url, urlIsReachable(url));
-    String response = BioJsHTMLOutput.getURLContentAsString(url);
-    AssertJUnit.assertNotNull("Null response read from url!", response);
-    BioJSRepositoryPojo repository = new BioJSRepositoryPojo(response);
-    System.out.println(">>> description : " + repository.getDescription());
-    System.out.println(">>> latest version : "
-            + repository.getLatestReleaseVersion());
-    System.out.println(">>> repo count : "
-            + repository.getReleases().size());
-    for (BioJSReleasePojo release : repository.getReleases())
-    {
-      System.out.println("repo type : " + release.getType());
-      System.out.println("url : " + release.getUrl());
-      System.out.println("release version : " + release.getVersion());
-    }
-  }
-
-  private static boolean urlIsReachable(String urlString)
-  {
-    try
-    {
-      final URL url = new URL(urlString);
-      final URLConnection conn = url.openConnection();
-      conn.connect();
-      return true;
-    } catch (MalformedURLException e)
-    {
-      throw new RuntimeException(e);
-    } catch (IOException e)
-    {
-      return false;
-    }
-  }
-}