Merge branch 'develop' into bug/JAL-2255_seq-fetcher-broken-on-linux

[jalview.git] / test / jalview / io / CrossRef2xmlTests.java

diff --git a/test/jalview/io/CrossRef2xmlTests.java b/test/jalview/io/CrossRef2xmlTests.java
index c55ddd9..ec5855f 100644 (file)
--- a/test/jalview/io/CrossRef2xmlTests.java
+++ b/test/jalview/io/CrossRef2xmlTests.java
@@ -30,6 +30,7 @@ import jalview.gui.AlignFrame;
 import jalview.gui.CrossRefAction;
 import jalview.gui.Desktop;
 import jalview.gui.Jalview2XML;
+import jalview.gui.JvOptionPane;
 
 import java.io.File;
 import java.io.IOException;
@@ -38,12 +39,21 @@ import java.util.HashMap;
 import java.util.List;
 
 import org.testng.Assert;
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
 @Test(singleThreaded = true)
 public class CrossRef2xmlTests extends Jalview2xmlBase
 {
 
+  @Override
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
   /**
    * test store and recovery of all reachable cross refs from all reachable
    * crossrefs for one or more fetched db refs. Currently, this test has a known
@@ -130,7 +140,7 @@ public class CrossRef2xmlTests extends Jalview2xmlBase
           Desktop.instance.closeAll_actionPerformed(null);
           // recover stored project
           af = new FileLoader(false).LoadFileWaitTillLoaded(savedProjects
-                  .get(first).toString(), FormatAdapter.FILE);
+                  .get(first).toString(), DataSourceType.FILE);
           System.out.println("Recovered view for '" + first + "' from '"
                   + savedProjects.get(first).toString() + "'");
           dna = af.getViewport().getAlignment().isNucleotide();
@@ -203,7 +213,7 @@ public class CrossRef2xmlTests extends Jalview2xmlBase
               // recover stored project
               AlignFrame af2 = new FileLoader(false)
                       .LoadFileWaitTillLoaded(savedProjects.get(nextxref)
-                              .toString(), FormatAdapter.FILE);
+                              .toString(), DataSourceType.FILE);
               System.out.println("Recovered view for '" + nextxref
                       + "' from '" + savedProjects.get(nextxref).toString()
                       + "'");
@@ -314,7 +324,8 @@ public class CrossRef2xmlTests extends Jalview2xmlBase
                     AlignFrame af2 = new FileLoader(false)
                             .LoadFileWaitTillLoaded(
                                     savedProjects.get(nextnextxref)
-                                            .toString(), FormatAdapter.FILE);
+                                            .toString(),
+                                    DataSourceType.FILE);
                     System.out.println("Recovered view for '"
                             + nextnextxref + "' from '"
                             + savedProjects.get(nextnextxref).toString()