Merge branch 'develop' into bug/JAL-2255_seq-fetcher-broken-on-linux

[jalview.git] / test / jalview / io / FileIOTester.java

diff --git a/test/jalview/io/FileIOTester.java b/test/jalview/io/FileIOTester.java
index 2eb3703..f6480a6 100644 (file)
--- a/test/jalview/io/FileIOTester.java
+++ b/test/jalview/io/FileIOTester.java
@@ -20,6 +20,8 @@
  */
 package jalview.io;
 
+import jalview.gui.JvOptionPane;
+
 import java.io.File;
 import java.io.IOException;
 
@@ -35,6 +37,13 @@ import org.testng.annotations.Test;
 public class FileIOTester
 {
 
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
   /**
    * @throws java.lang.Exception
    */
@@ -65,13 +74,14 @@ public class FileIOTester
   final static File STARS_FA_FILE2 = new File(
           "test/jalview/io/test_fasta_stars2.fa");
 
-  private void assertValidFormat(String fmt, String src, FileParse fp)
+  private void assertValidFormat(FileFormatI fmt, String src, FileParse fp)
+          throws FileFormatException
   {
     AssertJUnit.assertTrue("Couldn't resolve " + src + " as a valid file",
             fp.isValid());
-    String type = new IdentifyFile().identify(fp);
-    AssertJUnit.assertTrue("Data from '" + src + "' Expected to be '" + fmt
-            + "' identified as '" + type + "'", type.equalsIgnoreCase(fmt));
+    FileFormatI type = new IdentifyFile().identify(fp);
+    AssertJUnit.assertSame("Data from '" + src + "' Expected to be '" + fmt
+            + "' identified as '" + type + "'", type, fmt);
   }
 
   @Test(groups = { "Functional" })
@@ -79,8 +89,8 @@ public class FileIOTester
   {
     String uri;
     FileParse fp = new FileParse(uri = STARS_FA_FILE1.getAbsoluteFile()
-            .toString(), AppletFormatAdapter.FILE);
-    assertValidFormat("FASTA", uri, fp);
+            .toString(), DataSourceType.FILE);
+    assertValidFormat(FileFormat.Fasta, uri, fp);
   }
 
   @Test(groups = { "Functional" })
@@ -88,8 +98,8 @@ public class FileIOTester
   {
     String uri;
     FileParse fp = new FileParse(uri = STARS_FA_FILE2.getAbsoluteFile()
-            .toString(), AppletFormatAdapter.FILE);
-    assertValidFormat("FASTA", uri, fp);
+            .toString(), DataSourceType.FILE);
+    assertValidFormat(FileFormat.Fasta, uri, fp);
   }
 
   @Test(groups = { "Functional" })
@@ -97,8 +107,8 @@ public class FileIOTester
   {
     String uri;
     FileParse fp = new FileParse(uri = ALIGN_FILE.getAbsoluteFile().toURI()
-            .toString(), AppletFormatAdapter.URL);
-    assertValidFormat("FASTA", uri, fp);
+            .toString(), DataSourceType.URL);
+    assertValidFormat(FileFormat.Fasta, uri, fp);
   }
 
   @Test(groups = { "Functional" })
@@ -106,8 +116,8 @@ public class FileIOTester
   {
     String filepath;
     FileParse fp = new FileParse(filepath = ALIGN_FILE.getAbsoluteFile()
-            .toString(), AppletFormatAdapter.FILE);
-    assertValidFormat("FASTA", filepath, fp);
+            .toString(), DataSourceType.FILE);
+    assertValidFormat(FileFormat.Fasta, filepath, fp);
   }
 
   @Test(groups = { "Functional" })
@@ -115,8 +125,8 @@ public class FileIOTester
   {
     String uri;
     FileParse fp = new FileParse(uri = NOTGZALIGN_FILE.getAbsoluteFile()
-            .toURI().toString(), AppletFormatAdapter.URL);
-    assertValidFormat("FASTA", uri, fp);
+            .toURI().toString(), DataSourceType.URL);
+    assertValidFormat(FileFormat.Fasta, uri, fp);
   }
 
   @Test(groups = { "Functional" })
@@ -124,7 +134,7 @@ public class FileIOTester
   {
     String filepath;
     FileParse fp = new FileParse(filepath = NOTGZALIGN_FILE
-            .getAbsoluteFile().toString(), AppletFormatAdapter.FILE);
-    assertValidFormat("FASTA", filepath, fp);
+            .getAbsoluteFile().toString(), DataSourceType.FILE);
+    assertValidFormat(FileFormat.Fasta, filepath, fp);
   }
 }