+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.io;
import org.testng.Assert;
import org.testng.annotations.DataProvider;
import org.testng.annotations.Test;
-public class IdentifyFileTest {
+public class IdentifyFileTest
+{
- @Test(groups =
- { "Functional" }, dataProvider = "identifyFiles")
+ @Test(groups = { "Functional" }, dataProvider = "identifyFiles")
public void Identify(String data, String expectedFileType)
{
String protocol = AppletFormatAdapter.FILE;
@DataProvider(name = "identifyFiles")
public Object[][] IdentifyFileDP()
{
- return new Object[][]
- {
- { "examples/example.json", "JSON" },
- { "examples/plantfdx.fa", "FASTA" },
- { "examples/dna_interleaved.phy", "PHYLIP" },
- { "examples/2GIS.pdb", "PDB" },
- { "examples/rf00031_folded.stk", "STH" },
- { "examples/testdata/test.rnaml", "RNAML" },
- { "examples/testdata/test.aln", "CLUSTAL" },
- { "examples/testdata/test.pfam", "PFAM" },
- { "examples/testdata/test.msf", "MSF" },
- { "examples/testdata/test.pir", "PIR" },
- { "examples/testdata/test.html", "HTML" },
- { "examples/testdata/test.pileup", "PileUp" },
- { "examples/testdata/test.blc", "BLC" },
- { "examples/testdata/simplegff3.gff", "GFF v2 or v3" },
- { "examples/testdata/test.jvp", "Jalview" },
+ return new Object[][] {
+ { "examples/example.json", "JSON" },
+ { "examples/plantfdx.fa", "FASTA" },
+ { "examples/dna_interleaved.phy", "PHYLIP" },
+ { "examples/2GIS.pdb", "PDB" },
+ { "examples/rf00031_folded.stk", "STH" },
+ { "examples/testdata/test.rnaml", "RNAML" },
+ { "examples/testdata/test.aln", "CLUSTAL" },
+ { "examples/testdata/test.pfam", "PFAM" },
+ { "examples/testdata/test.msf", "MSF" },
+ { "examples/testdata/test.pir", "PIR" },
+ { "examples/testdata/test.html", "HTML" },
+ { "examples/testdata/test.pileup", "PileUp" },
+ { "examples/testdata/test.blc", "BLC" },
+ { "examples/testdata/simplegff3.gff", "GFF v2 or v3" },
+ { "examples/testdata/test.jvp", "Jalview" },
+ {
+ "examples/testdata/cullpdb_pc25_res3.0_R0.3_d150729_chains9361.fasta.15316",
+ "FASTA" },
+
// { "examples/testdata/test.amsa", "AMSA" },
// { "examples/test.jnet", "JnetFile" },
};