--- /dev/null
+LOCUS CH1L1CG 7502 bp DNA circular BCT 06-APR-2020
+DEFINITION Chlamydia trachomatis plasmid pCHL1, complete sequence.
+ACCESSION J03321
+VERSION J03321.1
+DBLINK BioSample: SAMN14225621
+KEYWORDS .
+SOURCE Chlamydia trachomatis
+ ORGANISM Chlamydia trachomatis
+ Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae;
+ Chlamydia/Chlamydophila group; Chlamydia.
+REFERENCE 1 (bases 1 to 7502)
+ AUTHORS Comanducci,M., Ricci,S., Cevenini,R. and Ratti,G.
+ TITLE Diversity of the Chlamydia trachomatis common plasmid in biovars
+ with different pathogenicity
+ JOURNAL Plasmid 23 (2), 149-154 (1990)
+ PUBMED 2194229
+REFERENCE 2 (bases 1 to 7502)
+ AUTHORS Comanducci,M., Ricci,S., Cevenini,R. and Ratti,G.
+ TITLE Direct Submission
+ JOURNAL Submitted (23-JUN-2010) Sclavo Research Centre, Siena, Italy
+COMMENT Draft entry and computer-readable sequence kindly submitted by
+ G.Ratti, 28-MAR-1990.
+ ! CDS location split below (and this line added), for Jalview test purposes !
+FEATURES Location/Qualifiers
+ source 1..7502
+ /organism="Chlamydia trachomatis"
+ /mol_type="genomic DNA"
+ /serotype="D"
+ /isolate="G0/86"
+ /isolation_source="trachoma"
+ /db_xref="taxon:813"
+ /plasmid="pCHL1"
+ CDS join(7022..7502,
+ 1..437)
+ /note="pGP7-D"
+ /codon_start=1
+ /transl_table=11
+ /product="hypothetical protein"
+ /protein_id="AAA91567.1"
+ /translation="MGSMAFHKSRLFLTFGDASEIWLSTLSYLTRKNYASGINFLVSL
+ EILDLSETLIKAISLDHSESLFKIKSLDVFNGKVVSEASKQARAACYISFTKFLYRLT
+ KGYIKPAIPLKDFGNTTFFKIRDKIKTESISKQEWTVFFEALRIVNYRDYLIGKLIVQ
+ GIRKLDEILSLRTDDLFFASNQISFRIKKRQNKETKILITFPISLMEELQKYTCGRNG
+ RVFVSKIGIPVTTSQVAHNFRLAEFHSAMKIKITPRVLRASALIHLKQIGLKDEEIMR
+ ISCLSSRQSVCSYCSGEEVIPLVQTPTIL"
+ CDS complement(488..1480)
+ /note="pGP8-D"
+ /codon_start=1
+ /transl_table=11
+ /product="hypothetical protein"
+ /protein_id="AAA91568.1"
+ /translation="MGKGILSLQQEMSLEYSEKSYQEVLKIRQESYWKRMKSFSLFEV
+ IMHWTASLNKHTCRSYRGSFLSLEKIGLLSLDMNLQEFSLLNHNLILDAIKKVSSAKT
+ SWTEGTKQVRAASYISLTRFLNRMTQGIVAIAQPSKQENSRTFFKTREIVKTDAMNSL
+ QTASFLKELKKINARDWLIAQTMLQGGKRSSEVLSLEISQICFQQATISFSQLKNRQT
+ EKRIIITYPQKFMHFLQEYIGQRRGFVFVTRSGKMVGLRQIARTFSQAGLQAAIPFKI
+ TPHVLRATAVTEYKRLGCSDSDIMKVTGHATAKMIFAYDKSSREDNASKKMALI"
+ CDS 1579..2934
+ /note="pGP1-D"
+ /codon_start=1
+ /transl_table=11
+ /product="hypothetical protein"
+ /protein_id="AAA91569.1"
+ /translation="MKTRSEIENRMQDIEYALLGKALIFEDSTEYILRQLANYEFKCS
+ HHKNIFIVFKHLKDNGLPITVDSAWEELLRRRIKDMDKSYLGLMLHDALSNDKLRSVS
+ HTVFLDDLSVCSAEENLSNFIFRSFNEYNENPLRRSPFLLLERIKGRLDSAIAKTFSI
+ RSARGRSIYDIFSQSEIGVLARIKKRRVAFSENQNSFFDGFPTGYKDIDDKGVILAKG
+ NFVIIAARPSIGKTALAIDMAINLAVTQQRRVGFLSLEMSAGQIVERIIANLTGISGE
+ KLQRGDLSKEELFRVEEAGETVRESHFYICSDSQYKLNLIANQIRLLRKEDRVDVIFI
+ DYLQLINSSVGENRQNEIADISRTLRGLASELNIPIVCLSQLSRKVEDRANKVPMLSD
+ LRDSGQIEQDADVILFINRKESSSNCEITVGKNRHGSVFSSVLHFDPKISKFSAIKKV
+ W"
+ CDS 2928..3992
+ /note="pGP2-D"
+ /codon_start=1
+ /transl_table=11
+ /product="hypothetical protein"
+ /protein_id="AAA91570.1"
+ /translation="MVNYSNCHFIKSPIHLENQKFGRRPGQSIKISPKLAQNGMVEVI
+ GLDFLSSHYHALAAIQRLLTATNYKGNTKGVVLSRESNSFQFEGWIPRIRFTKTEFLE
+ AYGVKRYKTSRNKYEFSGKEAETALEALYHLGHQPFLIVATRTRWTNGTQIVDRYQTL
+ SPIIRIYEGWEGLTDEENIDIDLTPFNSPPTRKHKGFVVEPCPILVDQIESYFVIKPA
+ NVYQEIKMRFPNASKYAYTFIDWVITAAAKKRRKLTKDNSWPENLLLNVNVKSLAYIL
+ RMNRYICTRNWKKIELAIDKCIEIAIQLGWLSRRKRIEFLDSSKLSKKEILYLNKERF
+ EEITKKSKEQMEQLEQESIN"
+ CDS 4054..4848
+ /note="pGP3-D"
+ /codon_start=1
+ /transl_table=11
+ /product="hypothetical protein"
+ /protein_id="AAA91571.1"
+ /translation="MGNSGFYLYNTENCVFADNIKVGQMTEPLKDQQIILGTTSTPVA
+ AKMTASDGISLTVSNNSSTNASITIGLDAEKAYQLILEKLGDQILDGIADTIVDSTVQ
+ DILDKIKTDPSLGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSG
+ SMFLVSADIIASRMEGGVVLALVREGDSKPCAISYGYSSGIPNLCSLRTSITNTGLTP
+ TTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTNA"
+ CDS 4918..5226
+ /note="pGP4-D"
+ /codon_start=1
+ /transl_table=11
+ /product="hypothetical protein"
+ /protein_id="AAA91572.1"
+ /translation="MQNKRKVRDDFIKIVKDVKKDFPELDLKIRVNKEKVTFLNSPLE
+ LYHKSVSLILGLLQQIENSLGLFPDSPVLEKLEDNSLKLKKALIMLILSRKDMFSKAE
+ "
+ CDS 5317..6048
+ /note="pGP5-D (gtg start codon)"
+ /codon_start=1
+ /transl_table=11
+ /product="hypothetical protein"
+ /protein_id="AAA91573.1"
+ /translation="MGCNLAQFLGKKVLLADLDPQSNLSSGLGASVRSDQKGLHDIVY
+ TSNDLKSIICETKKDSVDLIPASFSSEQFRELDIHRGPSNNLKLFLNEYCAPFYDICI
+ IDTPPSLGGLTKEAFVAGDKLIACLTPEPFSILGLQKIREFLSSVGKPEEEHILGIAL
+ SFWDDRNSTNQMYIDIIESIYKNKLFSTKIRRDISLSRSLLKEDSVANVYPNSRAAED
+ ILKLTHEIANILHIEYERDYSQRTT"
+ CDS 6045..6788
+ /note="pGP6-D (gtg start codon)"
+ /codon_start=1
+ /transl_table=11
+ /product="hypothetical protein"
+ /protein_id="AAA91574.1"
+ /translation="MNKLKKEADVFFKKNQTAASLDFKKTLPSIELFSATLNSEESQS
+ LDRLFLSESQNYSDEEFYQEDILAVKLLTGQIKSIQKQHVLLLGEKIYNARKILSKDH
+ FSSTTFSSWIELVFRTKSSAYNALAYYELFINLPNQTLQKEFQSIPYKSAYILAARKG
+ DLKTKVDVIGKVCGMSNSSAIRVLDQFLPSSRNKDVRETIDKSDSEKNRQLSDFLIEI
+ LRIMCSGVSLSSYNENLLQQLFELFKQKS"
+ repeat_region 6857..6945
+ /note="four tandem 22bp repeats"
+ORIGIN
+ 1 ggatccgtaa gttagacgaa attttgtctt tgcgcacaga cgatctattt tttgcatcca
+ 61 atcagatttc ctttcgcatt aaaaaaagac agaataaaga aaccaaaatt ctaatcacat
+ 121 ttcctatcag cttaatggaa gagttgcaaa aatacacttg tgggagaaat gggagagtat
+ 181 ttgtttctaa aatagggatt cctgtaacaa caagtcaggt tgcgcataat tttaggcttg
+ 241 cagagttcca tagtgctatg aaaataaaaa ttactcccag agtacttcgt gcaagcgctt
+ 301 tgattcattt aaagcaaata ggattaaaag atgaggaaat catgcgtatt tcctgtcttt
+ 361 catcgagaca aagtgtgtgt tcttattgtt ctggggaaga ggtaattcct ctagtacaaa
+ 421 cacccacaat attgtgatat aattaaaatt atattcatat tctgttgcca gaaaaaacac
+ 481 ctttaggcta tattagagcc atcttctttg aagcgttgtc ttctcgagaa gatttatcgt
+ 541 acgcaaatat catctttgcg gttgcgtgtc ctgtgacctt cattatgtcg gagtctgagc
+ 601 accctaggcg tttgtactcc gtcacagcgg ttgctcgaag cacgtgcggg gttattttaa
+ 661 aagggattgc agcttgtagt cctgcttgag agaacgtgcg ggcgatttgc cttaacccca
+ 721 ccatttttcc ggagcgagtt acgaagacaa aacctcttcg ttgaccgatg tactcttgta
+ 781 gaaagtgcat aaacttctga ggataagtta taataatcct cttttctgtc tgacggttct
+ 841 taagctggga gaaagaaatg gtagcttgtt ggaaacaaat ctgactaatc tccaagctta
+ 901 agacttcaga ggagcgttta cctccttgga gcattgtctg ggcgatcaac caatcccggg
+ 961 cattgatttt ttttagctct tttaggaagg atgctgtttg caaactgttc atcgcatccg
+ 1021 tttttactat ttccctggtt ttaaaaaatg ttcgactatt ttcttgttta gaaggttgcg
+ 1081 ctatagcgac tattccttga gtcatcctgt ttaggaatct tgttaaggaa atatagcttg
+ 1141 ctgctcgaac ttgtttagta ccttcggtcc aagaagtctt ggcagaggaa acttttttaa
+ 1201 tcgcatctag gattagatta tgatttaaaa gggaaaactc ttgcagattc atatccaagg
+ 1261 acaatagacc aatcttttct aaagacaaaa aagatcctcg atatgatcta caagtatgtt
+ 1321 tgttgagtga tgcggtccaa tgcataataa cttcgaataa ggagaagctt ttcatgcgtt
+ 1381 tccaatagga ttcttggcga atttttaaaa cttcctgata agacttttca ctatattcta
+ 1441 acgacatttc ttgctgcaaa gataaaatcc ctttacccat gaaatccctc gtgatataac
+ 1501 ctatccgtaa aatgtcctga ttagtgaaat aatcaggttg ttaacaggat agcacgctcg
+ 1561 gtattttttt atataaacat gaaaactcgt tccgaaatag aaaatcgcat gcaagatatc
+ 1621 gagtatgcgt tgttaggtaa agctctgata tttgaagact ctactgagta tattctgagg
+ 1681 cagcttgcta attatgagtt taagtgttct catcataaaa acatattcat agtatttaaa
+ 1741 cacttaaaag acaatggatt acctataact gtagactcgg cttgggaaga gcttttgcgg
+ 1801 cgtcgtatca aagatatgga caaatcgtat ctcgggttaa tgttgcatga tgctttatca
+ 1861 aatgacaagc ttagatccgt ttctcatacg gttttcctcg atgatttgag cgtgtgtagc
+ 1921 gctgaagaaa atttgagtaa tttcattttc cgctcgttta atgagtacaa tgaaaatcca
+ 1981 ttgcgtagat ctccgtttct attgcttgag cgtataaagg gaaggcttga tagtgctata
+ 2041 gcaaagactt tttctattcg cagcgctaga ggccggtcta tttatgatat attctcacag
+ 2101 tcagaaattg gagtgctggc tcgtataaaa aaaagacgag tagcgttctc tgagaatcaa
+ 2161 aattctttct ttgatggctt cccaacagga tacaaggata ttgatgataa aggagttatc
+ 2221 ttagctaaag gtaatttcgt gattatagca gctagaccat ctatagggaa aacagcttta
+ 2281 gctatagaca tggcgataaa tcttgcggtt actcaacagc gtagagttgg tttcctatct
+ 2341 ctagaaatga gcgcaggtca aattgttgag cggattattg ctaatttaac aggaatatct
+ 2401 ggtgaaaaat tacaaagagg ggatctctct aaagaagaat tattccgagt agaagaagct
+ 2461 ggagaaacgg ttagagaatc acatttttat atctgcagtg atagtcagta taagcttaac
+ 2521 ttaatcgcga atcagatccg gttgctgaga aaagaagatc gagtagacgt aatatttatc
+ 2581 gattacttgc agttgatcaa ctcatcggtt ggagaaaatc gtcaaaatga aatagcagat
+ 2641 atatctagaa ccttaagagg tttagcctca gagctaaaca ttcctatagt ttgtttatcc
+ 2701 caactatcta gaaaagttga ggatagagca aataaagttc ccatgctttc agatttgcga
+ 2761 gacagcggtc aaatagagca agacgcagat gtgattttgt ttatcaatag gaaggaatcg
+ 2821 tcttctaatt gtgagataac tgttgggaaa aatagacatg gatcggtttt ctcttcggta
+ 2881 ttacatttcg atccaaaaat tagtaaattc tccgctatta aaaaagtatg gtaaattata
+ 2941 gtaactgcca cttcatcaaa agtcctatcc accttgaaaa tcagaagttt ggaagaagac
+ 3001 ctggtcaatc tattaagata tctcccaaat tggctcaaaa tgggatggta gaagttatag
+ 3061 gtcttgattt tctttcatct cattaccatg cattagcagc tatccaaaga ttactgaccg
+ 3121 caacgaatta caaggggaac acaaaagggg ttgttttatc cagagaatca aatagttttc
+ 3181 aatttgaagg atggatacca agaatccgtt ttacaaaaac tgaattctta gaggcttatg
+ 3241 gagttaagcg gtataaaaca tccagaaata agtatgagtt tagtggaaaa gaagctgaaa
+ 3301 ctgctttaga agccttatac catttaggac atcaaccgtt tttaatagtg gcaactagaa
+ 3361 ctcgatggac taatggaaca caaatagtag accgttacca aactctttct ccgatcatta
+ 3421 ggatttacga aggatgggaa ggtttaactg acgaagaaaa tatagatata gacttaacac
+ 3481 cttttaattc accacctaca cggaaacata aagggttcgt tgtagagcca tgtcctatct
+ 3541 tggtagatca aatagaatcc tactttgtaa tcaagcctgc aaatgtatac caagaaataa
+ 3601 aaatgcgttt cccaaatgca tcaaagtatg cttacacatt tatcgactgg gtgattacag
+ 3661 cagctgcgaa aaagagacga aaattaacta aggataattc ttggccagaa aacttgttat
+ 3721 taaacgttaa cgttaaaagt cttgcatata ttttaaggat gaatcggtac atctgtacaa
+ 3781 ggaactggaa aaaaatcgag ttagctatcg ataaatgtat agaaatcgcc attcagcttg
+ 3841 gctggttatc tagaagaaaa cgcattgaat ttctggattc ttctaaactc tctaaaaaag
+ 3901 aaattctata tctaaataaa gagcgctttg aagaaataac taagaaatct aaagaacaaa
+ 3961 tggaacaatt agaacaagaa tctattaatt aatagcaagc ttgaaactaa aaacctaatt
+ 4021 tatttaaagc tcaaaataaa aaagagtttt aaaatgggaa attctggttt ttatttgtat
+ 4081 aacactgaaa actgcgtctt tgctgataat atcaaagttg ggcaaatgac agagccgctc
+ 4141 aaggaccagc aaataatcct tgggacaaca tcaacacctg tcgcagccaa aatgacagct
+ 4201 tctgatggaa tatctttaac agtctccaat aattcatcaa ccaatgcttc tattacaatt
+ 4261 ggtttggatg cggaaaaagc ttaccagctt attctagaaa agttgggaga tcaaattctt
+ 4321 gatggaattg ctgatactat tgttgatagt acagtccaag atattttaga caaaatcaaa
+ 4381 acagaccctt ctctaggttt gttgaaagct tttaacaact ttccaatcac taataaaatt
+ 4441 caatgcaacg ggttattcac tcccagtaac attgaaactt tattaggagg aactgaaata
+ 4501 ggaaaattca cagtcacacc caaaagctct gggagcatgt tcttagtctc agcagatatt
+ 4561 attgcatcaa gaatggaagg cggcgttgtt ctagctttgg tacgagaagg tgattctaag
+ 4621 ccctgcgcga ttagttatgg atactcatca ggcattccta atttatgtag tctaagaacc
+ 4681 agtattacta atacaggatt gactccgaca acgtattcat tacgtgtagg cggtttagaa
+ 4741 agcggtgtgg tatgggttaa tgccctttct aatggcaatg atattttagg aataacaaat
+ 4801 acttctaatg tatctttttt agaggtaata cctcaaacaa acgcttaaac aatttttatt
+ 4861 ggatttttct tataggtttt atatttagag aaaacagttc gaattacggg gtttgttatg
+ 4921 caaaataaaa gaaaagtgag ggacgatttt attaaaattg ttaaagatgt gaaaaaagat
+ 4981 ttccccgaat tagacctaaa aatacgagta aacaaggaaa aagtaacttt cttaaattct
+ 5041 cccttagaac tctaccataa aagtgtctca ctaattctag gactgcttca acaaatagaa
+ 5101 aactctttag gattattccc agactctcct gttcttgaaa aattagagga taacagttta
+ 5161 aagctaaaaa aggctttgat tatgcttatc ttgtctagaa aagacatgtt ttccaaggct
+ 5221 gaatagacaa cttactctaa cgttggagtt gatttgcaca ccttagtttt ttgctctttt
+ 5281 aagggaggaa ctggaaaaac aacactttct ctaaacgtgg gatgcaactt ggcccaattt
+ 5341 ttagggaaaa aagtgttact tgctgaccta gacccgcaat ccaatttatc ttctggattg
+ 5401 ggggctagtg tcagaagtga ccaaaaaggc ttgcacgaca tagtatacac atcaaacgat
+ 5461 ttaaaatcaa tcatttgcga aacaaaaaaa gatagtgtgg acctaattcc tgcatcattt
+ 5521 tcatccgaac agtttagaga attggatatt catagaggac ctagtaacaa cttaaagtta
+ 5581 tttctgaatg agtactgcgc tcctttttat gacatctgca taatagacac tccacctagc
+ 5641 ctaggagggt taacgaaaga agcttttgtt gcaggagaca aattaattgc ttgtttaact
+ 5701 ccagaacctt tttctattct agggttacaa aagatacgtg aattcttaag ttcggtcgga
+ 5761 aaacctgaag aagaacacat tcttggaata gctttgtctt tttgggatga tcgtaactcg
+ 5821 actaaccaaa tgtatataga cattatcgag tctatttaca aaaacaagct tttttcaaca
+ 5881 aaaattcgtc gagatatttc tctcagccgt tctcttctta aagaagattc tgtagctaat
+ 5941 gtctatccaa attctagggc cgcagaagat attctgaagt taacgcatga aatagcaaat
+ 6001 attttgcata tcgaatatga acgagattac tctcagagga caacgtgaac aaactaaaaa
+ 6061 aagaagcgga tgtctttttt aaaaaaaatc aaactgccgc ttctctagat tttaagaaga
+ 6121 cgcttccctc cattgaacta ttctcagcaa ctttgaattc tgaggaaagt cagagtttgg
+ 6181 atcgattatt tttatcagag tcccaaaact attcggatga agaattttat caagaagaca
+ 6241 tcctagcggt aaaactgctt actggtcaga taaaatccat acagaagcaa cacgtacttc
+ 6301 ttttaggaga aaaaatctat aatgctagaa aaatcctgag taaggatcac ttctcctcaa
+ 6361 caactttttc atcttggata gagttagttt ttagaactaa gtcttctgct tacaatgctc
+ 6421 ttgcatatta cgagcttttt ataaacctcc ccaaccaaac tctacaaaaa gagtttcaat
+ 6481 cgatccccta taaatccgca tatattttgg ccgctagaaa aggcgattta aaaaccaagg
+ 6541 tcgatgtgat agggaaagta tgtggaatgt cgaactcatc ggcgataagg gtgttggatc
+ 6601 aatttcttcc ttcatctaga aacaaagacg ttagagaaac gatagataag tctgattcag
+ 6661 agaagaatcg ccaattatct gatttcttaa tagagatact tcgcatcatg tgttccggag
+ 6721 tttctttgtc ctcctataac gaaaatcttc tacaacagct ttttgaactt tttaagcaaa
+ 6781 agagctgatc ctccgtcagc tcatatatat atatctatta tatatatata tttagggatt
+ 6841 tgatttcacg agagagattt gcaactcttg gtggtagact ttgcaactct tggtggtaga
+ 6901 ctttgcaact cttggtggta gactttgcaa ctcttggtgg tagacttggt cataatggac
+ 6961 ttttgttaaa aaatttatta aaatcttaga gctccgattt tgaatagctt tggttaagaa
+ 7021 aatgggctcg atggctttcc ataaaagtag attgttttta acttttgggg acgcgtcgga
+ 7081 aatttggtta tctactttat cttatctaac tagaaaaaat tatgcgtctg ggattaactt
+ 7141 tcttgtttct ttagagattc tggatttatc ggaaaccttg ataaaggcta tttctcttga
+ 7201 ccacagcgaa tctttgttta aaatcaagtc tctagatgtt tttaatggaa aagttgtttc
+ 7261 agaggcatct aaacaggcta gagcggcatg ctacatatct ttcacaaagt ttttgtatag
+ 7321 attgaccaag ggatatatta aacccgctat tccattgaaa gattttggaa acactacatt
+ 7381 ttttaaaatc cgagacaaaa tcaaaacaga atcgatttct aagcaggaat ggacagtttt
+ 7441 ttttgaagcg ctccggatag tgaattatag agactattta atcggtaaat tgattgtaca
+ 7501 ag
+//
+
git://source.jalview.org / jalview.git / blobdiff