import static org.testng.AssertJUnit.assertNotNull;
-import jalview.api.AlignExportSettingI;
+import jalview.api.AlignExportSettingsI;
+import jalview.datamodel.AlignExportSettingsAdapter;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.AlignmentI;
private JSONFile jf;
- private AlignExportSettingI exportSettings;
+ private AlignExportSettingsI exportSettings;
@BeforeTest(alwaysRun = true)
public void setup() throws Exception
TEST_ANOT_HEIGHT = expectedAnnots.size();
TEST_CS_HEIGHT = expectedColSel.getNumberOfRegions();
- exportSettings = new AlignExportSettingI()
- {
- @Override
- public boolean isExportHiddenSequences()
- {
- return true;
- }
-
- @Override
- public boolean isExportHiddenColumns()
- {
- return true;
- }
-
- @Override
- public boolean isExportGroups()
- {
- return true;
- }
-
- @Override
- public boolean isExportFeatures()
- {
- return true;
- }
-
- @Override
- public boolean isExportAnnotations()
- {
- return true;
- }
-
- @Override
- public boolean isCancelled()
- {
- return false;
- }
- };
+ exportSettings = new AlignExportSettingsAdapter(true);
AppletFormatAdapter formatAdapter = new AppletFormatAdapter();
try
testAlignment = formatAdapter.readFile(jsonOutput,
DataSourceType.PASTE, FileFormat.Json);
testJsonFile = (JSONFile) formatAdapter.getAlignFile();
- // System.out.println(jsonOutput);
+ System.out.println(jsonOutput);
} catch (IOException e)
{
e.printStackTrace();