Merge branch 'develop' into trialMerge

[jalview.git] / test / jalview / io / JSONFileTest.java

diff --git a/test/jalview/io/JSONFileTest.java b/test/jalview/io/JSONFileTest.java
index cd40bab..a18f395 100644 (file)
--- a/test/jalview/io/JSONFileTest.java
+++ b/test/jalview/io/JSONFileTest.java
@@ -114,7 +114,7 @@ public class JSONFileTest
 
     for (Sequence seq : seqs)
     {
-      seq.setDatasetSequence(seq);
+      seq.createDatasetSequence();
       expectedSeqs.put(seq.getName(), seq);
     }
 
@@ -305,7 +305,8 @@ public class JSONFileTest
     Assert.assertNotNull(cs.getHiddenColumns());
     List<int[]> hiddenCols = cs.getHiddenColumns();
     Assert.assertEquals(hiddenCols.size(), TEST_CS_HEIGHT);
-    Assert.assertEquals(hiddenCols, expectedColSel.getHiddenColumns(),
+    Assert.assertEquals(hiddenCols.get(0), expectedColSel
+            .getHiddenColumns().get(0),
             "Mismatched hidden columns!");
   }
 
@@ -314,7 +315,8 @@ public class JSONFileTest
   {
     Assert.assertNotNull(testJsonFile.getHiddenSequences(),
             "Hidden sequence Expected but found Null");
-    Assert.assertEquals(jf.getHiddenSequences().length, 1, "Hidden sequece");
+    Assert.assertEquals(jf.getHiddenSequences().length, 1,
+            "Hidden sequence");
   }
 
   @Test(groups = { "Functional" })