JAL-1499 corrected domainend parsing, add gene name to domain desc

[jalview.git] / test / jalview / io / MegaFileTest.java

diff --git a/test/jalview/io/MegaFileTest.java b/test/jalview/io/MegaFileTest.java
index 14cb27e..2766610 100644 (file)
--- a/test/jalview/io/MegaFileTest.java
+++ b/test/jalview/io/MegaFileTest.java
@@ -655,24 +655,24 @@ public class MegaFileTest
     for (SequenceI seq : seqs) {
       SequenceFeature[] sfs = seq.getSequenceFeatures();
       // features are added in the order in which their end is found
-      // (Gene before Domain when they end together)
+      // (Domain before Gene when they end together)
       assertEquals(5, sfs.length);
       // TODO settle which way round type/description go!
-      assertEquals("Exon1", sfs[0].type);
+      assertEquals("Exon1 (Adh)", sfs[0].type);
       assertEquals("Domain", sfs[0].description);
       assertEquals(7, sfs[0].begin);
       assertEquals(12, sfs[0].end);
-      assertEquals("Intron1", sfs[1].type);
+      assertEquals("Intron1 (Adh)", sfs[1].type);
       assertEquals("Domain", sfs[1].description);
       assertEquals(13, sfs[1].begin);
       assertEquals(18, sfs[1].end);
-      assertEquals("Adh", sfs[2].type);
-      assertEquals("Gene", sfs[2].description);
-      assertEquals(7, sfs[2].begin);
+      assertEquals("Exon2 (Adh)", sfs[2].type);
+      assertEquals("Domain", sfs[2].description);
+      assertEquals(19, sfs[2].begin);
       assertEquals(24, sfs[2].end);
-      assertEquals("Exon2", sfs[3].type);
-      assertEquals("Domain", sfs[3].description);
-      assertEquals(19, sfs[3].begin);
+      assertEquals("Adh", sfs[3].type);
+      assertEquals("Gene", sfs[3].description);
+      assertEquals(7, sfs[3].begin);
       assertEquals(24, sfs[3].end);
       assertEquals("BindingSite", sfs[4].type);
       assertEquals("Domain", sfs[4].description);