Merge branch 'develop' into bug/JAL-2255_seq-fetcher-broken-on-linux

[jalview.git] / test / jalview / io / SequenceAnnotationReportTest.java
diff --git a/test/jalview/io/SequenceAnnotationReportTest.java b/test/jalview/io/SequenceAnnotationReportTest.java

index a96a2a8..2895874 100644 (file)
--- a/test/jalview/io/SequenceAnnotationReportTest.java
+++ b/test/jalview/io/SequenceAnnotationReportTest.java
@@ -23,19 +23,29 @@ package jalview.io;
  import static org.testng.AssertJUnit.assertEquals;
  
  import jalview.datamodel.SequenceFeature;
+import jalview.gui.JvOptionPane;
  
  import java.util.Hashtable;
  import java.util.Map;
  
+import org.testng.annotations.BeforeClass;
  import org.testng.annotations.Test;
  
  public class SequenceAnnotationReportTest
  {
+
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
    @Test(groups = "Functional")
    public void testAppendFeature_disulfideBond()
    {
      SequenceAnnotationReport sar = new SequenceAnnotationReport(null);
-    StringBuffer sb = new StringBuffer();
+    StringBuilder sb = new StringBuilder();
      sb.append("123456");
      SequenceFeature sf = new SequenceFeature("disulfide bond", "desc", 1,
              3, 1.2f, "group");
@@ -60,7 +70,7 @@ public class SequenceAnnotationReportTest
    public void testAppendFeature_status()
    {
      SequenceAnnotationReport sar = new SequenceAnnotationReport(null);
-    StringBuffer sb = new StringBuffer();
+    StringBuilder sb = new StringBuilder();
      SequenceFeature sf = new SequenceFeature("METAL", "Fe2-S", 1, 3,
              Float.NaN, "group");
      sf.setStatus("Confirmed");
@@ -73,7 +83,7 @@ public class SequenceAnnotationReportTest
    public void testAppendFeature_withScore()
    {
      SequenceAnnotationReport sar = new SequenceAnnotationReport(null);
-    StringBuffer sb = new StringBuffer();
+    StringBuilder sb = new StringBuilder();
      SequenceFeature sf = new SequenceFeature("METAL", "Fe2-S", 1, 3, 1.3f,
              "group");
  
@@ -106,7 +116,7 @@ public class SequenceAnnotationReportTest
    public void testAppendFeature_noScore()
    {
      SequenceAnnotationReport sar = new SequenceAnnotationReport(null);
-    StringBuffer sb = new StringBuffer();
+    StringBuilder sb = new StringBuilder();
      SequenceFeature sf = new SequenceFeature("METAL", "Fe2-S", 1, 3,
              Float.NaN, "group");
  
@@ -118,7 +128,7 @@ public class SequenceAnnotationReportTest
    public void testAppendFeature_clinicalSignificance()
    {
      SequenceAnnotationReport sar = new SequenceAnnotationReport(null);
-    StringBuffer sb = new StringBuffer();
+    StringBuilder sb = new StringBuilder();
      SequenceFeature sf = new SequenceFeature("METAL", "Fe2-S", 1, 3,
              Float.NaN, "group");
      sf.setValue("clinical_significance", "Benign");
@@ -131,7 +141,7 @@ public class SequenceAnnotationReportTest
    public void testAppendFeature_withScoreStatusClinicalSignificance()
    {
      SequenceAnnotationReport sar = new SequenceAnnotationReport(null);
-    StringBuffer sb = new StringBuffer();
+    StringBuilder sb = new StringBuilder();
      SequenceFeature sf = new SequenceFeature("METAL", "Fe2-S", 1, 3, 1.3f,
              "group");
      sf.setStatus("Confirmed");
@@ -148,7 +158,7 @@ public class SequenceAnnotationReportTest
    public void testAppendFeature_DescEqualsType()
    {
      SequenceAnnotationReport sar = new SequenceAnnotationReport(null);
-    StringBuffer sb = new StringBuffer();
+    StringBuilder sb = new StringBuilder();
      SequenceFeature sf = new SequenceFeature("METAL", "METAL", 1, 3,
              Float.NaN, "group");
  
@@ -167,7 +177,7 @@ public class SequenceAnnotationReportTest
    public void testAppendFeature_stripHtml()
    {
      SequenceAnnotationReport sar = new SequenceAnnotationReport(null);
-    StringBuffer sb = new StringBuffer();
+    StringBuilder sb = new StringBuilder();
      SequenceFeature sf = new SequenceFeature("METAL",
              "<html><body>hello<em>world</em></body></html>", 1, 3,
              Float.NaN, "group");