Merge branch 'feature/JAL-3187linkedFeatures' into feature/JAL-3251biotypedMappings

[jalview.git] / test / jalview / io / SequenceAnnotationReportTest.java

diff --git a/test/jalview/io/SequenceAnnotationReportTest.java b/test/jalview/io/SequenceAnnotationReportTest.java
index 87e35c7..cf3c7e5 100644 (file)
--- a/test/jalview/io/SequenceAnnotationReportTest.java
+++ b/test/jalview/io/SequenceAnnotationReportTest.java
@@ -37,11 +37,11 @@ import jalview.viewmodel.seqfeatures.FeatureRendererModel;
 import java.awt.Color;
 import java.util.Map;
 
-import junit.extensions.PA;
-
 import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
+import junit.extensions.PA;
+
 public class SequenceAnnotationReportTest
 {
 
@@ -158,7 +158,8 @@ public class SequenceAnnotationReportTest
     /*
      * then with colour by an attribute the feature lacks
      */
-    FeatureColourI fc = new FeatureColour(Color.white, Color.black, 5, 10);
+    FeatureColourI fc = new FeatureColour(null, Color.white, Color.black,
+            null, 5, 10);
     fc.setAttributeName("Pfam");
     fr.setColour("METAL", fc);
     sb.setLength(0);
@@ -187,7 +188,8 @@ public class SequenceAnnotationReportTest
 
     FeatureRendererModel fr = new FeatureRenderer(null);
     Map<String, float[][]> minmax = fr.getMinMax();
-    FeatureColourI fc = new FeatureColour(Color.white, Color.blue, 12, 22);
+    FeatureColourI fc = new FeatureColour(null, Color.white, Color.blue,
+            null, 12, 22);
     fc.setAttributeName("clinical_significance");
     fr.setColour("METAL", fc);
     minmax.put("METAL", new float[][] { { 0f, 1f }, null });
@@ -328,7 +330,8 @@ public class SequenceAnnotationReportTest
 
     // with showDbRefs = true, colour Variant features by clinical_significance
     sb.setLength(0);
-    FeatureColourI fc = new FeatureColour(Color.green, Color.pink, 2, 3);
+    FeatureColourI fc = new FeatureColour(null, Color.green, Color.pink,
+            null, 2, 3);
     fc.setAttributeName("clinical_significance");
     fr.setColour("Variant", fc);
     sar.createSequenceAnnotationReport(sb, seq, true, true, fr);