JAL-3187 javadoc

[jalview.git] / test / jalview / io / vcf / testVcf.dat

diff --git a/test/jalview/io/vcf/testVcf.dat b/test/jalview/io/vcf/testVcf.dat
index e9e6c22..77e070c 100644 (file)
--- a/test/jalview/io/vcf/testVcf.dat
+++ b/test/jalview/io/vcf/testVcf.dat
@@ -4,7 +4,7 @@
 ##INFO=<ID=AF_Female,Number=R,Type=Float,Description="Allele Frequency among Female genotypes, for each ALT allele, in the same order as listed">
 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
 ##INFO=<ID=CSQ,Number=.,Type=String,Description="Consequence annotations from Ensembl VEP. Format: Allele|Consequence|IMPACT|SYMBOL|Gene|Feature_type|Feature|BIOTYPE|PolyPhen">
-##reference=GRCh38
+##reference=/Homo_sapiens/GRCh38
 #CHROM POS     ID      REF     ALT     QUAL    FILTER  INFO
 5      45051610        .       C       A       81.96   RF;AC0  AC=1;AF=0.1;AN=0;AF_Female=2;AB_MEDIAN=6.00000e-01;CSQ=A|missense_variant|MODIFIER|WASH7P|gene3|Transcript|transcript3|rna|Benign,A|downstream_gene_variant|MODIFIER|WASH7P|gene3|Transcript|transcript4|mrna|Bad
 5      45051614        .       C       T       1666.64 RF      AC=1;AF=0.2;AN=0;AF_Female=2;AB_MEDIAN=6.00000e-01;CSQ=T|missense_variant|MODIFIER|WASH7P|gene3|Transcript|transcript3|rna|Benign,T|downstream_gene_variant|MODIFIER|WASH7P|gene3|Transcript|transcript4|mrna|Bad