Merge branch 'develop' into releases/Release_2_11_Branch

[jalview.git] / test / jalview / io / vcf / testVcf2.vcf

diff --git a/test/jalview/io/vcf/testVcf2.vcf b/test/jalview/io/vcf/testVcf2.vcf
new file mode 100644 (file)
index 0000000..aa3792a
--- /dev/null
+++ b/test/jalview/io/vcf/testVcf2.vcf
@@ -0,0 +1,13 @@
+##fileformat=VCFv4.2
+##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
+##contig=<ID=contig123,length=15>
+##contig=<ID=contig456,length=20>
+##contig=<ID=contig789,length=25>
+##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
+##reference=test/jalview/io/vcf/contigs.fasta
+#CHROM POS     ID      REF     ALT     QUAL    FILTER  INFO
+contig123      8       .       C       A       81.96   .       AC=1;AF=0.1
+contig123      12      .       G       T       1666.64 .       AC=1;AF=0.2
+contig456      15      .       T       C       41.94   .       AC=1;AF=0.3
+contig789      2       .       G       T       224.23  .       AC=1,2;AF=0
+contig789      21      .       G       A       433.35  .       AC=3;AF=0.6