Merge branch 'develop' into merged_2_11_2_0_to_2_12

[jalview.git] / test / jalview / schemes / AnnotationColourGradientTest.java

diff --git a/test/jalview/schemes/AnnotationColourGradientTest.java b/test/jalview/schemes/AnnotationColourGradientTest.java
index c56da59..35e3c2f 100644 (file)
--- a/test/jalview/schemes/AnnotationColourGradientTest.java
+++ b/test/jalview/schemes/AnnotationColourGradientTest.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.schemes;
 
 import static org.testng.Assert.assertEquals;
@@ -50,8 +70,8 @@ public class AnnotationColourGradientTest
     }
 
     seq = new Sequence("Seq", "");
-    al = new Alignment(new SequenceI[]{ seq});
-    
+    al = new Alignment(new SequenceI[] { seq });
+
     /*
      * AlignmentAnnotation constructor works out min-max range
      */
@@ -217,12 +237,10 @@ public class AnnotationColourGradientTest
        * expect white at or below threshold of 5
        */
       Color expected = col <= 5 ? Color.white
-              : new Color(50 + 10 * col,
-              200 - 10 * col,
-              150 + 10 * col);
+              : new Color(50 + 10 * col, 200 - 10 * col, 150 + 10 * col);
       assertEquals(result, expected, "for column " + col);
     }
-  
+
     /*
      * now make 6-10 the span of the colour range
      * (annotation value == column number in this test)
@@ -236,9 +254,8 @@ public class AnnotationColourGradientTest
        */
       int factor = col - THRESHOLD_FIVE;
       Color expected = col <= 5 ? Color.white
-              : new Color(50 + 20 * factor,
-              200 - 20 * factor,
-              150 + 20 * factor);
+              : new Color(50 + 20 * factor, 200 - 20 * factor,
+                      150 + 20 * factor);
       Color result = testee.findColour('a', col, seq);
       assertEquals(result, expected, "for column " + col);
     }
@@ -253,16 +270,15 @@ public class AnnotationColourGradientTest
     AnnotationColourGradient testee = new AnnotationColourGradient(ann,
             minColour, maxColour, AnnotationColourGradient.BELOW_THRESHOLD);
     testee = (AnnotationColourGradient) testee.getInstance(null, al);
-  
+
     for (int col = 0; col < WIDTH; col++)
     {
       Color result = testee.findColour('a', col, seq);
       Color expected = col >= 5 ? Color.white
-              : new Color(50 + 10 * col,
-              200 - 10 * col, 150 + 10 * col);
+              : new Color(50 + 10 * col, 200 - 10 * col, 150 + 10 * col);
       assertEquals(result, expected, "for column " + col);
     }
-  
+
     /*
      * now make 0-5 the span of the colour range
      * (annotation value == column number in this test)
@@ -275,8 +291,7 @@ public class AnnotationColourGradientTest
        * range is 0-5 so steps of 100/5 = 20
        */
       Color expected = col >= 5 ? Color.white
-              : new Color(50 + 20 * col,
-              200 - 20 * col, 150 + 20 * col);
+              : new Color(50 + 20 * col, 200 - 20 * col, 150 + 20 * col);
       Color result = testee.findColour('a', col, seq);
       assertEquals(result, expected, "for column " + col);
     }
@@ -322,7 +337,8 @@ public class AnnotationColourGradientTest
     {
       int hue = col * 20;
       Color c = col == 0 ? minColour : new Color(hue, hue, hue);
-      assertEquals(testee.findColour('a', col, seq), c, "for column " + col);
+      assertEquals(testee.findColour('a', col, seq), c,
+              "for column " + col);
     }
   }
 }