import jalview.io.FormatAdapter;
import jalview.io.StockholmFileTest;
import jalview.project.Jalview2XML;
-import jalview.ws.jws2.AbstractJabaCalcWorker;
+import jalview.ws.jws2.SeqAnnotationServiceCalcWorker;
import jalview.ws.jws2.JabaParamStore;
import jalview.ws.jws2.Jws2Discoverer;
import jalview.ws.jws2.SequenceAnnotationWSClient;
public static Jws2Instance rnaalifoldws;
- AbstractJabaCalcWorker alifoldClient;
+ SeqAnnotationServiceCalcWorker alifoldClient;
public static jalview.gui.AlignFrame af = null;
public void testRNAAliFoldValidStructure()
{
- alifoldClient = new AbstractJabaCalcWorker(rnaalifoldws, af, null,
+ alifoldClient = new SeqAnnotationServiceCalcWorker(rnaalifoldws, af, null,
null);
af.getViewport().getCalcManager().startWorker(alifoldClient);
public void testRNAStructExport()
{
- alifoldClient = new AbstractJabaCalcWorker(rnaalifoldws, af, null,
+ alifoldClient = new SeqAnnotationServiceCalcWorker(rnaalifoldws, af, null,
null);
af.getViewport().getCalcManager().startWorker(alifoldClient);
opts.add(rg);
}
}
- alifoldClient = new AbstractJabaCalcWorker(rnaalifoldws, af, null,
+ alifoldClient = new SeqAnnotationServiceCalcWorker(rnaalifoldws, af, null,
JabaParamStore.getJwsArgsfromJaba(opts));
af.getViewport().getCalcManager().startWorker(alifoldClient);