JAL-3210 Barebones gradle/buildship/eclipse. See README

[jalview.git] / test / mc_view / AtomTest.java

diff --git a/test/mc_view/AtomTest.java b/test/mc_view/AtomTest.java
deleted file mode 100644 (file)
index e1b6d78..0000000
--- a/test/mc_view/AtomTest.java
+++ /dev/null
@@ -1,93 +0,0 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *  
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License
- * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- */
-package mc_view;
-
-import static org.testng.AssertJUnit.assertEquals;
-
-import jalview.gui.JvOptionPane;
-
-import org.testng.Assert;
-import org.testng.annotations.BeforeClass;
-import org.testng.annotations.Test;
-
-public class AtomTest
-{
-
-  @BeforeClass(alwaysRun = true)
-  public void setUpJvOptionPane()
-  {
-    JvOptionPane.setInteractiveMode(false);
-    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
-  }
-
-  /**
-   * Test the constructor that parses a PDB file format ATOM line. Fields are in
-   * fixed column positions
-   */
-  @Test(groups = { "Functional" })
-  public void testStringConstructor()
-  {
-    Atom a = new Atom(
-            "ATOM    349  NE2 GLN A  48      22.290   8.595  17.680  1.00 14.30           N");
-    assertEquals(349, a.atomIndex);
-    assertEquals("NE", a.name);
-    assertEquals("GLN", a.resName);
-    assertEquals("A", a.chain);
-    assertEquals(48, a.resNumber);
-    assertEquals("48", a.resNumIns);
-    assertEquals(' ', a.insCode);
-    assertEquals(22.290, a.x, 0.00001);
-    assertEquals(8.595, a.y, 0.00001);
-    assertEquals(17.680, a.z, 0.00001);
-    assertEquals(1f, a.occupancy, 0.00001);
-    assertEquals(14.3, a.tfactor, 0.00001);
-  }
-
-  /**
-   * Test the case where occupancy and temp factor are blank - should default to
-   * 1
-   */
-  @Test(groups = { "Functional" })
-  public void testStringConstructor_blankOccupancyTempFactor()
-  {
-    Atom a = new Atom(
-            "ATOM    349  NE2 GLN A  48      22.290   8.595  17.680                       N");
-    assertEquals(1f, a.occupancy, 0.00001);
-    assertEquals(1f, a.tfactor, 0.00001);
-  }
-
-  /**
-   * Parsing non-numeric data as Atom throws an exception
-   */
-  @Test(groups = { "Functional" })
-  public void testStringConstructor_malformed()
-  {
-    try
-    {
-      new Atom(
-              "ATOM    34N  NE2 GLN A  48      22.290   8.595  17.680  1.00 14.30           N");
-      Assert.fail("Expected exception");
-    } catch (NumberFormatException e)
-    {
-      // expected
-    }
-  }
-}