JAL-3111 intervalstore library on IA classpath

[jalview.git] / utils / InstallAnywhere / Jalview.iap_xml

diff --git a/utils/InstallAnywhere/Jalview.iap_xml b/utils/InstallAnywhere/Jalview.iap_xml
index 0e23d53..0ff3407 100755 (executable)
--- a/utils/InstallAnywhere/Jalview.iap_xml
+++ b/utils/InstallAnywhere/Jalview.iap_xml
@@ -1,18 +1,34 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<!-- This script was automatically generated using InstallAnywhere 2013 Professional, Build 4538
+<!-- This script was automatically generated using InstallAnywhere 2014 Professional, Build 4783
      STATUS: Fully Functional LICENSED Edition
-     DATE:   Fri Nov 01 13:57:32 GMT 2013 -->
-<InstallAnywhere_Deployment_Project increments="5103">
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+     DATE:   Wed Sep 16 18:09:53 BST 2015 -->
+<InstallAnywhere_Deployment_Project increments="5904">
        <!-- ** DO NOT EDIT ** Essential authorization and configuration data ** DO NOT EDIT ** -->
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@@ -262,6 +278,19 @@ and any path to a file to save to the file]]></string>
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+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="244f00faa672">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1164,13 +1193,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[Jmol-12.2.4.jar]]></string>
+                                                               <string><![CDATA[slf4j-log4j12-1.7.7.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1182,10 +1211,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[Jmol-12.2.4.jar]]></string>
+                                                               <string><![CDATA[slf4j-log4j12-1.7.7.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>4938027</long>
+                                                               <long>8870</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1199,7 +1228,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="b1a16838a449">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="88d4aff3b0c6">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1216,13 +1245,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[castor-1.1-cycle-xml.jar]]></string>
+                                                               <string><![CDATA[Jmol-14.6.4_2016.10.26.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1234,10 +1263,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[castor-1.1-cycle-xml.jar]]></string>
+                                                               <string><![CDATA[Jmol-14.6.4_2016.10.26.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>1035998</long>
+                                                               <long>5417196</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1274,7 +1303,7 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1326,7 +1355,7 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1372,13 +1401,793 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[min-jabaws-client-2.1.0.jar]]></string>
+                                                               <string><![CDATA[jabaws-min-client-2.2.0.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[min-jabaws-client-2.2.0.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>601804</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17529b9c">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[httpcore-4.0.1.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[httpcore-4.0.1.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>172888</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17519b9c">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[httpclient-4.0.3.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[httpclient-4.0.3.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>292893</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17539b9c">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[httpmime-4.0.3.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[httpmime-4.0.3.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>25447</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17529b9d">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
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+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[apache-mime4j-0.6.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[apache-mime4j-0.6.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>345048</long>
+                                                       </property>
+                                                       <property name="macBinary">
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+                                                       <property name="targetCheckKind">
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+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a521fb6bc">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
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+                                                       <property name="ruleExpression">
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+                                                       <property name="unixPermissions">
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+                                                       </property>
+                                                       <property name="sourceName">
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+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
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+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[miglayout-4.0-swing.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>77291</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
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+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a5220b6bc1">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
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+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[commons-codec-1.3.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
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+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[commons-codec-1.3.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>46725</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
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+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a5220b6bc">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
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+                                                       <property name="ruleExpression">
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+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
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+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
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+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
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+                                                       <property name="rollbackEnabledCancel">
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+                                                       <property name="rollbackEnabledError">
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+                                                       <property name="destinationName">
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+                                                       </property>
+                                                       <property name="macBinary">
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+                                                       <property name="ruleExpression">
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+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="df3a5220b6bc">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
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+                                                       <property name="rollbackEnabledCancel">
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+                                                       <property name="sourceName">
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+                                                               <boolean>false</boolean>
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+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
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+                                                       <property name="shouldUninstall">
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+                                                       <property name="rollbackEnabledCancel">
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+                                                       <property name="rollbackEnabledError">
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+                                                       <property name="destinationName">
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+                                                       <property name="fileSize">
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+                                                       </property>
+                                                       <property name="macBinary">
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+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f44ca393ab9f">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
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+                                                       <property name="rollbackEnabledCancel">
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+                                                       <property name="rollbackEnabledError">
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+                                                       <property name="sourceName">
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+                                                       <property name="overrideUnixPermissions">
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+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
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+                                                       <property name="shouldUninstall">
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+                                                       <property name="rollbackEnabledError">
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+                                                       </property>
+                                                       <property name="destinationName">
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+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>6149494</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1f46cffffab93">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[jfreesvg-2.1.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[jfreesvg-2.1.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>49768</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1f46efeefab93">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[json_simple-1.1.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[json_simple-1.1.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>16046</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="841f46efeefab93">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[libqaqua64.jnilib]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[libqaqua64.jnilib]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>16046</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="9a1f46efeefab93">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[libquaqua.jnilib]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[libquaqua.jnilib]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>16046</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+            <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="9a1f46efeef911a">
+              <property name="belongsToUninstallPhase">
+                <boolean>false</boolean>
+              </property>
+              <property name="rollbackEnabledCancel">
+                <boolean>true</boolean>
+              </property>
+              <property name="rollbackEnabledError">
+                <boolean>true</boolean>
+              </property>
+              <property name="ruleExpression">
+                <string><![CDATA[]]></string>
+              </property>
+              <property name="unixPermissions">
+                <string><![CDATA[664]]></string>
+              </property>
+              <property name="sourceName">
+                <string><![CDATA[VAqua5-patch.jar]]></string>
+              </property>
+              <property name="overrideUnixPermissions">
+                <boolean>false</boolean>
+              </property>
+              <property name="sourcePath">
+                <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+              </property>
+              <property name="shouldUninstall">
+                <boolean>true</boolean>
+              </property>
+              <property name="rollbackEnabledCancel">
+                <boolean>true</boolean>
+              </property>
+              <property name="rollbackEnabledError">
+                <boolean>true</boolean>
+              </property>
+              <property name="destinationName">
+                <string><![CDATA[VAqua5-patch.jar]]></string>
+              </property>
+              <property name="fileSize">
+                <long>1370564</long>
+              </property>
+              <property name="macBinary">
+                <boolean>false</boolean>
+              </property>
+              <property name="targetCheckKind">
+                <int>0</int>
+              </property>
+              <property name="ruleExpression">
+                <string><![CDATA[]]></string>
+              </property>
+            </object>
+          </method>
+          <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1936efeefab93">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[quaqua-filechooser-only-8.0.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1390,10 +2199,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[min-jabaws-client-2.1.0.jar]]></string>
+                                                               <string><![CDATA[quaqua-filechooser-only-8.0.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>133065</long>
+                                                               <long>660179</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1407,7 +2216,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17529b9c">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="10936efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1424,13 +2233,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[httpcore-4.0.1.jar]]></string>
+                                                               <string><![CDATA[jersey-client-1.19.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1442,10 +2251,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[httpcore-4.0.1.jar]]></string>
+                                                               <string><![CDATA[jersey-client-1.19.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>172888</long>
+                                                               <long>134021</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1459,7 +2268,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17519b9c">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="11936efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1476,13 +2285,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[httpclient-4.0.3.jar]]></string>
+                                                               <string><![CDATA[jersey-core-1.19.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1494,10 +2303,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[httpclient-4.0.3.jar]]></string>
+                                                               <string><![CDATA[jersey-core-1.19.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>292893</long>
+                                                               <long>436689</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1511,7 +2320,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17539b9c">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="12936efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1528,13 +2337,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[httpmime-4.0.3.jar]]></string>
+                                                               <string><![CDATA[jersey-json-1.19.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1546,10 +2355,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[httpmime-4.0.3.jar]]></string>
+                                                               <string><![CDATA[jersey-json-1.19.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>25447</long>
+                                                               <long>165345</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1563,7 +2372,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17529b9d">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="13936efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1580,13 +2389,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[apache-mime4j-0.6.jar]]></string>
+                                                               <string><![CDATA[java-json.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1598,10 +2407,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[apache-mime4j-0.6.jar]]></string>
+                                                               <string><![CDATA[java-json.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>345048</long>
+                                                               <long>84697</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1615,7 +2424,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a521fb6bc">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="14936efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1632,13 +2441,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[miglayout-4.0-swing.jar]]></string>
+                                                               <string><![CDATA[jsr311-api-1.1.1.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1650,10 +2459,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[miglayout-4.0-swing.jar]]></string>
+                                                               <string><![CDATA[jsr311-api-1.1.1.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>77291</long>
+                                                               <long>46367</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1667,7 +2476,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a5220b6bc1">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="15936efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1684,13 +2493,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[commons-codec-1.3.jar]]></string>
+                                                               <string><![CDATA[jetty-http-9.2.10.v20150310.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1702,10 +2511,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[commons-codec-1.3.jar]]></string>
+                                                               <string><![CDATA[jetty-http-9.2.10.v20150310.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>46725</long>
+                                                               <long>105748</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1719,7 +2528,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a5220b6bc">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="16936efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1736,13 +2545,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[jswingreader-0.3.jar]]></string>
+                                                               <string><![CDATA[jetty-io-9.2.10.v20150310.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1754,10 +2563,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[jswingreader-0.3.jar]]></string>
+                                                               <string><![CDATA[jetty-io-9.2.10.v20150310.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>86618</long>
+                                                               <long>108132</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1771,7 +2580,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="df3a5220b6bc">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="17936efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1788,13 +2597,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[VARNAv3-91.jar]]></string>
+                                                               <string><![CDATA[jetty-server-9.2.10.v20150310.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1806,10 +2615,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[VARNAv3-91.jar]]></string>
+                                                               <string><![CDATA[jetty-server-9.2.10.v20150310.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>663408</long>
+                                                               <long>418917</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1823,7 +2632,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f44ca391ab9f">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="18936efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1840,13 +2649,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[spring-web-3.0.5.RELEASE.jar]]></string>
+                                                               <string><![CDATA[jetty-util-9.2.10.v20150310.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1858,10 +2667,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[spring-web-3.0.5.RELEASE.jar]]></string>
+                                                               <string><![CDATA[jetty-util-9.2.10.v20150310.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>395587</long>
+                                                               <long>356253</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1875,7 +2684,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f44ca392ab9f">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1000ddddfab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1892,13 +2701,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[jdas-1.0.4.jar]]></string>
+                                                               <string><![CDATA[htsjdk-2.12.0.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1910,10 +2719,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[jdas-1.0.4.jar]]></string>
+                                                               <string><![CDATA[htsjdk-2.12.0.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>249906</long>
+                                                               <long>16046</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1927,7 +2736,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f44ca393ab9f">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1000ddddfb93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1944,13 +2753,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[groovy-all-1.8.2.jar]]></string>
+                                                               <string><![CDATA[intervalstore-v0.4.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1962,10 +2771,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[groovy-all-1.8.2.jar]]></string>
+                                                               <string><![CDATA[intervalstore-v0.4.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>6149494</long>
+                                                               <long>26303</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1979,7 +2788,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f46c2f42ab93">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1000ddddfab939">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1996,13 +2805,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[spring-core-3.0.5.RELEASE.jar]]></string>
+                                                               <string><![CDATA[servlet-api-3.1.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -2014,10 +2823,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[spring-core-3.0.5.RELEASE.jar]]></string>
+                                                               <string><![CDATA[servlet-api-3.1.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>382442</long>
+                                                               <long>16046</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -2036,7 +2845,7 @@ and any path to a file to save to the file]]></string>
                                <string><![CDATA[The installer cannot run on your configuration. It will now quit.]]></string>
                        </property>
                        <property name="userSplashPath">
-                               <string><![CDATA[/home/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
+                               <string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
                        </property>
                        <property name="userSplashName">
                                <string><![CDATA[jalview.gif]]></string>
@@ -2373,6 +3182,94 @@ You may cancel this installation at any time by clicking the 'Cancel' button.]]>
                                                </object>
                                        </method>
                                        <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.EditVariableTable" objectID="ea739b658d07">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[CP904]]></string>
+                                                       </property>
+                                                       <property name="name">
+                                                               <string><![CDATA[PLATFORM_JVM_OPTS]]></string>
+                                                       </property>
+                                                       <property name="value">
+                                                               <string><![CDATA[-Xdock:name=Jalview -Xdock:icon=$USER_INSTALL_DIR$/Jalview.app/Contents/Resources/LaunchAnywhere.icns]]></string>
+                                                       </property>
+                                                       <property name="passByValue">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="substituteUnknownVariable">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <rules logicalOperation="AND">
+                                                               <object class="com.zerog.ia.installer.rules.PlatformChk" objectID="ea74fe6b8d07">
+                                                                       <property name="belongsToUninstallPhase">
+                                                                               <boolean>false</boolean>
+                                                                       </property>
+                                                                       <property name="rollbackEnabledCancel">
+                                                                               <boolean>true</boolean>
+                                                                       </property>
+                                                                       <property name="rollbackEnabledError">
+                                                                               <boolean>true</boolean>
+                                                                       </property>
+                                                                       <property name="ruleExpression">
+                                                                               <string><![CDATA[]]></string>
+                                                                       </property>
+                                                                       <property name="installOnPlatformList">
+                                                                               <object class="java.util.Vector">
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[Mac OS X]]></string>
+                                                                                       </method>
+                                                                               </object>
+                                                                       </property>
+                                                                       <property name="doNotInstallOnPlatformList">
+                                                                               <object class="java.util.Vector">
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[^Windows.*]]></string>
+                                                                                       </method>
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[Solaris]]></string>
+                                                                                       </method>
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[SunOS]]></string>
+                                                                                       </method>
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[HP-UX]]></string>
+                                                                                       </method>
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[Linux]]></string>
+                                                                                       </method>
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[AIX]]></string>
+                                                                                       </method>
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[FreeBSD]]></string>
+                                                                                       </method>
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[NetWare]]></string>
+                                                                                       </method>
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[OS/400]]></string>
+                                                                                       </method>
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[Unlisted Platforms]]></string>
+                                                                                       </method>
+                                                                               </object>
+                                                                       </property>
+                                                                       <property name="ruleId">
+                                                                               <string><![CDATA[CP904]]></string>
+                                                                       </property>
+                                                               </object>
+                                                       </rules>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
                                                <object class="com.zerog.ia.installer.actions.InstallSummary" objectID="fe7d64bfa66c">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
@@ -2842,10 +3739,13 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="buildWithVM">
-                                                                                               <boolean>false</boolean>
+                                                                                               <boolean>true</boolean>
+                                                                                       </property>
+                                                                                       <property name="bundledVM">
+                                                                                               <string><![CDATA[OracleJRE180u92_macosx.vm]]></string>
                                                                                        </property>
                                                                                        <property name="withoutVmSearchOption">
-                                                                                               <short>13</short>
+                                                                                               <short>10</short>
                                                                                        </property>
                                                                                        <property name="withVMSearchOption">
                                                                                                <short>21</short>
@@ -2879,7 +3779,7 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="bundledVM">
-                                                                                               <string><![CDATA[SunJRE160_01iWin32.vm]]></string>
+                                                                                               <string><![CDATA[OracleJRE8u92_windows(x86).vm]]></string>
                                                                                        </property>
                                                                                        <property name="withoutVmSearchOption">
                                                                                                <short>10</short>
@@ -2913,7 +3813,7 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="buildWithVM">
-                                                                                               <boolean>true</boolean>
+                                                                                               <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="bundledVM">
                                                                                                <string><![CDATA[IBMJRE142AIX_ca1420-20040626.vm]]></string>
@@ -2950,10 +3850,10 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="buildWithVM">
-                                                                                               <boolean>true</boolean>
+                                                                                               <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="bundledVM">
-                                                                                               <string><![CDATA[JRE16_16002HPUX11PA-RISC.vm]]></string>
+                                                                                               <string><![CDATA[JRE16_16010HPUXPA-RISC.vm]]></string>
                                                                                        </property>
                                                                                        <property name="withoutVmSearchOption">
                                                                                                <short>10</short>
@@ -2990,13 +3890,13 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="bundledVM">
-                                                                                               <string><![CDATA[SunJRE160_26LinuxINTEL.vm]]></string>
+                                                                                               <string><![CDATA[OracleJRE180u92_Linux32.vm]]></string>
                                                                                        </property>
                                                                                        <property name="withoutVmSearchOption">
                                                                                                <short>10</short>
                                                                                        </property>
                                                                                        <property name="withVMSearchOption">
-                                                                                               <short>21</short>
+                                                                                               <short>20</short>
                                                                                        </property>
                                                                                        <property name="win32InstallerLauncherType">
                                                                                                <short>90</short>
@@ -3027,7 +3927,7 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="bundledVM">
-                                                                                               <string><![CDATA[SunJRE160_26SolarisSPARC.vm]]></string>
+                                                                                               <string><![CDATA[OracleJRE8u5_SolarisSparc.vm]]></string>
                                                                                        </property>
                                                                                        <property name="withoutVmSearchOption">
                                                                                                <short>10</short>
@@ -3092,13 +3992,13 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <string><![CDATA[UNIX_with_VM]]></string>
                                                                                        </property>
                                                                                        <property name="buildNoVM">
-                                                                                               <boolean>false</boolean>
+                                                                                               <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="buildWithVM">
                                                                                                <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="bundledVM">
-                                                                                               <string><![CDATA[SunJRE160_02LinuxINTEL.vm]]></string>
+                                                                                               <string><![CDATA[OracleJRE180u92_Linux32.vm]]></string>
                                                                                        </property>
                                                                                        <property name="withoutVmSearchOption">
                                                                                                <short>10</short>
@@ -3163,16 +4063,19 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <string><![CDATA[Windows_Pure_64_Bit]]></string>
                                                                                        </property>
                                                                                        <property name="buildNoVM">
-                                                                                               <boolean>false</boolean>
+                                                                                               <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="buildWithVM">
-                                                                                               <boolean>false</boolean>
+                                                                                               <boolean>true</boolean>
+                                                                                       </property>
+                                                                                       <property name="bundledVM">
+                                                                                               <string><![CDATA[OracleJRE180u92_windows(x64).vm]]></string>
                                                                                        </property>
                                                                                        <property name="withoutVmSearchOption">
                                                                                                <short>10</short>
                                                                                        </property>
                                                                                        <property name="withVMSearchOption">
-                                                                                               <short>21</short>
+                                                                                               <short>20</short>
                                                                                        </property>
                                                                                        <property name="win32InstallerLauncherType">
                                                                                                <short>90</short>
@@ -3235,7 +4138,7 @@ Press "Done" to quit the installer.]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="buildOutputLocation">
-                                                               <string><![CDATA[/home/cruisecontrol/checkout/release-jalview/utils/InstallAnywhere/Jalview_Build_Output]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/Jalview_Build_Output]]></string>
                                                        </property>
                                                        <property name="relatedProjectSettings">
                                                                <object class="com.zerog.ia.installer.RelatedProjectSettings" objectID="97f2363da6ac">
@@ -4141,7 +5044,7 @@ Press "Done" to quit the installer.]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="credentialInformation">
-                                                               <object class="com.flexera.ia.vapp.datastructures.VMWareCredentialInformationImpl" objectID="27759feba050">
+                                                               <object class="com.flexera.ia.vapp.datastructures.VMWareCredentialInformationImpl" objectID="eaa38cb2933b">
                                                                        <property name="hostName">
                                                                                <string><![CDATA[]]></string>
                                                                        </property>
@@ -4263,11 +5166,11 @@ Press "Done" to quit the installer.]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.installer.options.valid.vm.list]]></string>
-                                               <string><![CDATA[1.6,1.7,1.8+]]></string>
+                                               <string><![CDATA[1.8*]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.project.build.last.date]]></string>
-                                               <string><![CDATA[21 October 2013 14:27:40 o'clock BST]]></string>
+                                               <string><![CDATA[16 September 2015 18:09:53 o'clock BST]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.build.platform.windows.vm]]></string>
@@ -4335,7 +5238,7 @@ Press "Done" to quit the installer.]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.project.save.last.date]]></string>
-                                               <string><![CDATA[01 November 2013 13:57:31 o'clock GMT]]></string>
+                                               <string><![CDATA[16 September 2015 18:09:53 o'clock BST]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.build.options.optimization.platform.cdrom]]></string>
@@ -4359,7 +5262,7 @@ Press "Done" to quit the installer.]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.installer.options.platform.macosx.vm.version]]></string>
-                                               <string><![CDATA[1.6+]]></string>
+                                               <string><![CDATA[1.8*]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.build.platform.java.novm]]></string>
@@ -4399,7 +5302,7 @@ Press "Done" to quit the installer.]]></string>
                                                <boolean>true</boolean>
                                        </property>
                                        <property name="backgroundImagePath">
-                                               <string><![CDATA[/home/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
+                                               <string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
                                        </property>
                                        <property name="backgroundImageName">
                                                <string><![CDATA[align.gif]]></string>
@@ -4613,16 +5516,23 @@ Press "Done" to quit the installer.]]></string>
                                                                <int>2</int>
                                                        </property>
                                                        <property name="minor">
-                                                               <int>8</int>
+                                                               <int>9</int>
                                                        </property>
                                                        <property name="revision">
                                                                <int>0</int>
                                                        </property>
                                                        <property name="subRevision">
-                                                               <int>0</int>
+                                                               <int>1</int>
                                                        </property>
                                                </object>
                                        </property>
+                                       <property name="upgradeCode">
+                                               <object class="com.zerog.registry.UUID">
+                                                       <method name="update">
+                                                               <string><![CDATA[fe7d6410-1ed5-11b2-a662-f4777f28dbfc]]></string>
+                                                       </method>
+                                               </object>
+                                       </property>
                                        <property name="supportURL">
                                                <string><![CDATA[http://www.jalview.org/faq]]></string>
                                        </property>
@@ -4643,7 +5553,7 @@ Press "Done" to quit the installer.]]></string>
                                                <string><![CDATA[jalview-discuss@jalview.org]]></string>
                                        </property>
                                        <property name="copyright">
-                                               <string><![CDATA[2013]]></string>
+                                               <string><![CDATA[2015]]></string>
                                        </property>
                                        <property name="license">
                                                <string><![CDATA[Commercial]]></string>
@@ -5636,6 +6546,80 @@ This will remove features installed by InstallAnywhere.  It will not remove file
                        <property name="oldStyleInstallersEnabled">
                                <boolean>false</boolean>
                        </property>
+                       <property name="upgradeSettings">
+                               <object class="com.zerog.ia.installer.UpgradeSettings" objectID="1b941ce786e7">
+                                       <property name="enableUpgrade">
+                                               <boolean>false</boolean>
+                                       </property>
+                                       <property name="upgradeConfigurationsList">
+                                               <object class="java.util.ArrayList" list="true">
+                                                       <method name="add">
+                                                               <object class="com.zerog.ia.installer.UpgradeConfiguration" objectID="1b941ce886e7">
+                                                                       <property name="detectionBasedOn">
+                                                                               <string><![CDATA[PRODUCT_CODE]]></string>
+                                                                       </property>
+                                                                       <property name="requireValidationForPreviousProductCode">
+                                                                               <boolean>false</boolean>
+                                                                       </property>
+                                                                       <property name="maxVersion">
+                                                                               <object class="com.zerog.ia.installer.util.Version" objectID="1b941cea86e7">
+                                                                                       <property name="major">
+                                                                                               <int>1</int>
+                                                                                       </property>
+                                                                                       <property name="minor">
+                                                                                               <int>0</int>
+                                                                                       </property>
+                                                                                       <property name="revision">
+                                                                                               <int>0</int>
+                                                                                       </property>
+                                                                                       <property name="subRevision">
+                                                                                               <int>0</int>
+                                                                                       </property>
+                                                                               </object>
+                                                                       </property>
+                                                                       <property name="minVersion">
+                                                                               <object class="com.zerog.ia.installer.util.Version" objectID="1b941ce886e8">
+                                                                                       <property name="major">
+                                                                                               <int>1</int>
+                                                                                       </property>
+                                                                                       <property name="minor">
+                                                                                               <int>0</int>
+                                                                                       </property>
+                                                                                       <property name="revision">
+                                                                                               <int>0</int>
+                                                                                       </property>
+                                                                                       <property name="subRevision">
+                                                                                               <int>0</int>
+                                                                                       </property>
+                                                                               </object>
+                                                                       </property>
+                                                                       <property name="configurationName">
+                                                                               <string><![CDATA[Default Upgrade Configuration]]></string>
+                                                                       </property>
+                                                               </object>
+                                                       </method>
+                                               </object>
+                                       </property>
+                                       <property name="abortInstallationIfUninstallFails">
+                                               <boolean>true</boolean>
+                                       </property>
+                                       <property name="automaticallyRemoveAllExistingInstallations">
+                                               <boolean>true</boolean>
+                                       </property>
+                                       <property name="promptUserOnExistanceOfMultiplePreviousInstallations">
+                                               <boolean>false</boolean>
+                                       </property>
+                                       <property name="allowCustomizationOfUserInstallDirectory">
+                                               <boolean>false</boolean>
+                                       </property>
+                                       <property name="retainFeaturePreferences">
+                                               <boolean>false</boolean>
+                                       </property>
+                               </object>
+                       </property>
+                       <property name="tomcatServerNamesList">
+                               <object class="java.util.ArrayList" list="true"/>
+                       </property>
                        <visualChildren>
                                <object class="com.zerog.ia.installer.InstallSet" objectID="fe7d6493a66a">
                                        <property name="belongsToUninstallPhase">
@@ -6133,14 +7117,16 @@ and any path to a file to read from that file]]></string>
                                                                                <object refID="24485f8aa671"/>
                                                                                <object refID="24485f89a672"/>
                                                                                <object refID="24485f8aa672"/>
-                    <object refID="244ffffaa672"/>
-                    <object refID="244f00faa672"/>
+                                                                               <object refID="244fff00ffff"/>
+                                                                               <object refID="244ffffaa672"/>
+                                                                               <object refID="244f00faa672"/>
                                                                                <object refID="24485f8ba672"/>
                                                                                <object refID="24485f8aa673"/>
                                                                                <object refID="24485f8ba673"/>
                                                                                <object refID="24485f8ca673"/>
                                                                                <object refID="24485f8ba674"/>
                                                                                <object refID="24485f8ca674"/>
+                                                                               <object refID="9a1f46efeef911a"/>
                                                                                <object class="com.zerog.ia.installer.actions.CreateShortcut" objectID="3cd8e2ffa672">
                                                                                        <property name="belongsToUninstallPhase">
                                                                                                <boolean>false</boolean>
@@ -6202,7 +7188,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6243,7 +7229,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6284,7 +7270,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/doc/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/doc/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6293,7 +7279,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <string><![CDATA[building.html]]></string>
                                                                                        </property>
                                                                                        <property name="fileSize">
-                                                                                               <long>4444</long>
+                                                                                               <long>4447</long>
                                                                                        </property>
                                                                                        <property name="macBinary">
                                                                                                <boolean>false</boolean>
@@ -6303,7 +7289,6 @@ and any path to a file to read from that file]]></string>
                                                                                        </property>
                                                                                </object>
                                                                                <object refID="88d4aff3b0c6"/>
-                                                                               <object refID="b1a16838a449"/>
                                                                                <object refID="b1a16839a449"/>
                                                                                <object refID="495aeddb8b3d"/>
                                                                                <object refID="4996716cba8e"/>
@@ -6315,9 +7300,24 @@ and any path to a file to read from that file]]></string>
                                                                                <object refID="aa3a5220b6bc"/>
                                                                                <object refID="df3a5220b6bc"/>
                                                                                <object refID="aa3a5220b6bc1"/>
-                                                                               <object refID="f44ca391ab9f"/>
-                                                                               <object refID="f44ca392ab9f"/>
+
                                                                                <object refID="f44ca393ab9f"/>
+
+                                                                               <object refID="1f46cffffab93"/>
+                                                                               <object refID="1f46efeefab93"/>
+                                                                               <object refID="1936efeefab93"/>
+                                                                               <object refID="1000ddddfab93"/>
+                                                                               <object refID="1000ddddfb93"/>
+                                                                               <object refID="1000ddddfab939"/>
+                                                                               <object refID="10936efeefab93"/>
+                                                                               <object refID="11936efeefab93"/>
+                                                                               <object refID="12936efeefab93"/>
+                                                                               <object refID="13936efeefab93"/>
+                                                                               <object refID="14936efeefab93"/>
+                                                                               <object refID="15936efeefab93"/>
+                                                                               <object refID="16936efeefab93"/>
+                                                                               <object refID="17936efeefab93"/>
+                                                                               <object refID="18936efeefab93"/>
                                                                                <object class="com.zerog.ia.installer.actions.InstallFile" objectID="f44fc5b2aba1">
                                                                                        <property name="belongsToUninstallPhase">
                                                                                                <boolean>false</boolean>
@@ -6341,7 +7341,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6382,7 +7382,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6423,7 +7423,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6464,7 +7464,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6505,7 +7505,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6520,7 +7520,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <string><![CDATA[exampleFile_2_7.jar]]></string>
                                                                                        </property>
                                                                                        <property name="fileSize">
-                                                                                               <long>107135</long>
+                                                                                               <long>107635</long>
                                                                                        </property>
                                                                                        <property name="macBinary">
                                                                                                <boolean>false</boolean>
@@ -6555,7 +7555,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6564,7 +7564,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <string><![CDATA[1gaq.txt]]></string>
                                                                                        </property>
                                                                                        <property name="fileSize">
-                                                                                               <long>56649</long>
+                                                                                               <long>55958</long>
                                                                                        </property>
                                                                                        <property name="macBinary">
                                                                                                <boolean>false</boolean>
@@ -6596,7 +7596,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6605,7 +7605,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <string><![CDATA[uniref50.fa]]></string>
                                                                                        </property>
                                                                                        <property name="fileSize">
-                                                                                               <long>3039</long>
+                                                                                               <long>2979</long>
                                                                                        </property>
                                                                                        <property name="macBinary">
                                                                                                <boolean>false</boolean>
@@ -6637,7 +7637,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6678,7 +7678,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6687,7 +7687,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <string><![CDATA[exampleFeatures.txt]]></string>
                                                                                        </property>
                                                                                        <property name="fileSize">
-                                                                                               <long>31397</long>
+                                                                                               <long>31399</long>
                                                                                        </property>
                                                                                        <property name="macBinary">
                                                                                                <boolean>false</boolean>
@@ -6719,7 +7719,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6760,7 +7760,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6769,7 +7769,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <string><![CDATA[ferredoxin.nw]]></string>
                                                                                        </property>
                                                                                        <property name="fileSize">
-                                                                                               <long>392</long>
+                                                                                               <long>391</long>
                                                                                        </property>
                                                                                        <property name="macBinary">
                                                                                                <boolean>false</boolean>
@@ -6801,7 +7801,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6819,7 +7819,6 @@ and any path to a file to read from that file]]></string>
                                                                                                <int>0</int>
                                                                                        </property>
                                                                                </object>
-                                                                               <object refID="f46c2f42ab93"/>
                                                                                <object class="com.zerog.ia.installer.actions.InstallDirectory" objectID="24485f85a670">
                                                                                        <property name="belongsToUninstallPhase">
                                                                                                <boolean>false</boolean>
@@ -6843,7 +7842,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6869,14 +7868,16 @@ and any path to a file to read from that file]]></string>
                                                                                                <object refID="24485f8aa671"/>
                                                                                                <object refID="24485f89a672"/>
                                                                                                <object refID="24485f8aa672"/>
-                        <object refID="244ffffaa672"/>
-                        <object refID="244f00faa672"/>
+                                                                                               <object refID="244fff00ffff"/>
+                                                                                               <object refID="244ffffaa672"/>
+                                                                                               <object refID="244f00faa672"/>
                                                                                                <object refID="24485f8ba672"/>
                                                                                                <object refID="24485f8aa673"/>
                                                                                                <object refID="24485f8ba673"/>
                                                                                                <object refID="24485f8ca673"/>
                                                                                                <object refID="24485f8ba674"/>
                                                                                                <object refID="24485f8ca674"/>
+                                                                                               <object refID="9a1f46efeef911a"/>
                                                                                                <object refID="b1a16838a449"/>
                                                                                                <object refID="b1a16839a449"/>
                                                                                                <object refID="495aeddb8b3d"/>
@@ -6893,6 +7894,20 @@ and any path to a file to read from that file]]></string>
                                                                                                <object refID="f44ca392ab9f"/>
                                                                                                <object refID="f44ca393ab9f"/>
                                                                                                <object refID="f46c2f42ab93"/>
+                                                                                               <object refID="1f46cffffab93"/>
+                                                                                               <object refID="1f46efeefab93"/>
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+                                                                                               <object refID="1000ddddfab93"/>
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+                                                                                               <object refID="10936efeefab93"/>
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+                                                                                               <object refID="16936efeefab93"/>
+                                                                                               <object refID="17936efeefab93"/>
+                                                                                               <object refID="18936efeefab93"/>
                                                                                        </visualChildren>
                                                                                </object>
                                                                                <object class="com.zerog.ia.installer.actions.InstallDirectory" objectID="f44fc5d5aba1">
@@ -6918,7 +7933,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/groovy]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/groovy]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6930,7 +7945,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="totalSize">
-                                                                                               <long>1</long>
+                                                                                               <long>30621</long>
                                                                                        </property>
                                                                                        <property name="macBinary">
                                                                                                <boolean>false</boolean>
@@ -6959,7 +7974,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>false</boolean>
@@ -6992,6 +8007,88 @@ and any path to a file to read from that file]]></string>
                                                                                                <object refID="f44fc68baba3"/>
                                                                                        </visualChildren>
                                                                                </object>
+                                                                               <object class="com.zerog.ia.installer.actions.InstallFile" objectID="ea43799f8a5c">
+                                                                                       <property name="belongsToUninstallPhase">
+                                                                                               <boolean>false</boolean>
+                                                                                       </property>
+                                                                                       <property name="rollbackEnabledCancel">
+                                                                                               <boolean>true</boolean>
+                                                                                       </property>
+                                                                                       <property name="rollbackEnabledError">
+                                                                                               <boolean>true</boolean>
+                                                                                       </property>
+                                                                                       <property name="ruleExpression">
+                                                                                               <string><![CDATA[]]></string>
+                                                                                       </property>
+                                                                                       <property name="unixPermissions">
+                                                                                               <string><![CDATA[664]]></string>
+                                                                                       </property>
+                                                                                       <property name="sourceName">
+                                                                                               <string><![CDATA[THIRDPARTYLIBS]]></string>
+                                                                                       </property>
+                                                                                       <property name="overrideUnixPermissions">
+                                                                                               <boolean>false</boolean>
+                                                                                       </property>
+                                                                                       <property name="sourcePath">
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/]]></string>
+                                                                                       </property>
+                                                                                       <property name="shouldUninstall">
+                                                                                               <boolean>true</boolean>
+                                                                                       </property>
+                                                                                       <property name="destinationName">
+                                                                                               <string><![CDATA[THIRDPARTYLIBS]]></string>
+                                                                                       </property>
+                                                                                       <property name="fileSize">
+                                                                                               <long>2612</long>
+                                                                                       </property>
+                                                                                       <property name="macBinary">
+                                                                                               <boolean>false</boolean>
+                                                                                       </property>
+                                                                                       <property name="targetCheckKind">
+                                                                                               <int>0</int>
+                                                                                       </property>
+                                                                               </object>
+                                                                               <object class="com.zerog.ia.installer.actions.InstallFile" objectID="ea4379a48a5c">
+                                                                                       <property name="belongsToUninstallPhase">
+                                                                                               <boolean>false</boolean>
+                                                                                       </property>
+                                                                                       <property name="rollbackEnabledCancel">
+                                                                                               <boolean>true</boolean>
+                                                                                       </property>
+                                                                                       <property name="rollbackEnabledError">
+                                                                                               <boolean>true</boolean>
+                                                                                       </property>
+                                                                                       <property name="ruleExpression">
+                                                                                               <string><![CDATA[]]></string>
+                                                                                       </property>
+                                                                                       <property name="unixPermissions">
+                                                                                               <string><![CDATA[664]]></string>
+                                                                                       </property>
+                                                                                       <property name="sourceName">
+                                                                                               <string><![CDATA[AUTHORS]]></string>
+                                                                                       </property>
+                                                                                       <property name="overrideUnixPermissions">
+                                                                                               <boolean>false</boolean>
+                                                                                       </property>
+                                                                                       <property name="sourcePath">
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/]]></string>
+                                                                                       </property>
+                                                                                       <property name="shouldUninstall">
+                                                                                               <boolean>true</boolean>
+                                                                                       </property>
+                                                                                       <property name="destinationName">
+                                                                                               <string><![CDATA[AUTHORS]]></string>
+                                                                                       </property>
+                                                                                       <property name="fileSize">
+                                                                                               <long>809</long>
+                                                                                       </property>
+                                                                                       <property name="macBinary">
+                                                                                               <boolean>false</boolean>
+                                                                                       </property>
+                                                                                       <property name="targetCheckKind">
+                                                                                               <int>0</int>
+                                                                                       </property>
+                                                                               </object>
                                                                        </installChildren>
                                                                </object>
                                                                <object class="com.zerog.ia.installer.InstallComponent" objectID="fe7d6497a66b">
@@ -7159,7 +8256,7 @@ and any path to a file to read from that file]]></string>
                                                                                <string><![CDATA[]]></string>
                                                                        </property>
                                                                        <property name="imagePath">
-                                                                               <string><![CDATA[/home/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
+                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
                                                                        </property>
                                                                        <property name="imageName">
                                                                                <string><![CDATA[bartonGroup.gif]]></string>
@@ -7407,6 +8504,8 @@ and any path to a file to read from that file]]></string>
                                                                <object refID="24485f85a670"/>
                                                                <object refID="f44fc598aba0"/>
                                                                <object refID="094ab0d49607"/>
+                                                               <object refID="ea43799f8a5c"/>
+                                                               <object refID="ea4379a48a5c"/>
                                                        </visualChildren>
                                                </object>
                                                <object class="com.zerog.ia.installer.GhostDirectory" objectID="3cd94e29a677">