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- DATE: Mon Oct 21 14:27:40 BST 2013 -->
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+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ DATE: Wed Sep 16 18:09:53 BST 2015 -->
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<string><![CDATA[664]]></string>
</property>
<property name="sourceName">
- <string><![CDATA[groovy-all-1.8.2.jar]]></string>
+ <string><![CDATA[htsjdk-1.133.jar]]></string>
</property>
<property name="overrideUnixPermissions">
<boolean>false</boolean>
<boolean>true</boolean>
</property>
<property name="destinationName">
- <string><![CDATA[groovy-all-1.8.2.jar]]></string>
+ <string><![CDATA[htsjdk-1.133.jar]]></string>
</property>
<property name="fileSize">
- <long>6149494</long>
+ <long>16046</long>
</property>
<property name="macBinary">
<boolean>false</boolean>
</object>
</method>
<method name="addElement">
- <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f46c2f42ab93">
+ <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1000ddddfab939">
<property name="belongsToUninstallPhase">
<boolean>false</boolean>
</property>
<string><![CDATA[664]]></string>
</property>
<property name="sourceName">
- <string><![CDATA[spring-core-3.0.5.RELEASE.jar]]></string>
+ <string><![CDATA[servlet-api-3.1.jar]]></string>
</property>
<property name="overrideUnixPermissions">
<boolean>false</boolean>
<boolean>true</boolean>
</property>
<property name="destinationName">
- <string><![CDATA[spring-core-3.0.5.RELEASE.jar]]></string>
+ <string><![CDATA[servlet-api-3.1.jar]]></string>
</property>
<property name="fileSize">
- <long>382442</long>
+ <long>16046</long>
</property>
<property name="macBinary">
<boolean>false</boolean>
</object>
</method>
<method name="addElement">
+ <object class="com.zerog.ia.installer.actions.EditVariableTable" objectID="ea739b658d07">
+ <property name="belongsToUninstallPhase">
+ <boolean>false</boolean>
+ </property>
+ <property name="rollbackEnabledCancel">
+ <boolean>true</boolean>
+ </property>
+ <property name="rollbackEnabledError">
+ <boolean>true</boolean>
+ </property>
+ <property name="ruleExpression">
+ <string><![CDATA[CP904]]></string>
+ </property>
+ <property name="name">
+ <string><![CDATA[PLATFORM_JVM_OPTS]]></string>
+ </property>
+ <property name="value">
+ <string><![CDATA[-Xdock:name=Jalview -Xdock:icon=$USER_INSTALL_DIR$/Jalview.app/Contents/Resources/LaunchAnywhere.icns]]></string>
+ </property>
+ <property name="passByValue">
+ <boolean>true</boolean>
+ </property>
+ <property name="substituteUnknownVariable">
+ <boolean>false</boolean>
+ </property>
+ <rules logicalOperation="AND">
+ <object class="com.zerog.ia.installer.rules.PlatformChk" objectID="ea74fe6b8d07">
+ <property name="belongsToUninstallPhase">
+ <boolean>false</boolean>
+ </property>
+ <property name="rollbackEnabledCancel">
+ <boolean>true</boolean>
+ </property>
+ <property name="rollbackEnabledError">
+ <boolean>true</boolean>
+ </property>
+ <property name="ruleExpression">
+ <string><![CDATA[]]></string>
+ </property>
+ <property name="installOnPlatformList">
+ <object class="java.util.Vector">
+ <method name="addElement">
+ <string><![CDATA[Mac OS X]]></string>
+ </method>
+ </object>
+ </property>
+ <property name="doNotInstallOnPlatformList">
+ <object class="java.util.Vector">
+ <method name="addElement">
+ <string><![CDATA[^Windows.*]]></string>
+ </method>
+ <method name="addElement">
+ <string><![CDATA[Solaris]]></string>
+ </method>
+ <method name="addElement">
+ <string><![CDATA[SunOS]]></string>
+ </method>
+ <method name="addElement">
+ <string><![CDATA[HP-UX]]></string>
+ </method>
+ <method name="addElement">
+ <string><![CDATA[Linux]]></string>
+ </method>
+ <method name="addElement">
+ <string><![CDATA[AIX]]></string>
+ </method>
+ <method name="addElement">
+ <string><![CDATA[FreeBSD]]></string>
+ </method>
+ <method name="addElement">
+ <string><![CDATA[NetWare]]></string>
+ </method>
+ <method name="addElement">
+ <string><![CDATA[OS/400]]></string>
+ </method>
+ <method name="addElement">
+ <string><![CDATA[Unlisted Platforms]]></string>
+ </method>
+ </object>
+ </property>
+ <property name="ruleId">
+ <string><![CDATA[CP904]]></string>
+ </property>
+ </object>
+ </rules>
+ </object>
+ </method>
+ <method name="addElement">
<object class="com.zerog.ia.installer.actions.InstallSummary" objectID="fe7d64bfa66c">
<property name="belongsToUninstallPhase">
<boolean>false</boolean>
<boolean>true</boolean>
</property>
<property name="buildWithVM">
- <boolean>false</boolean>
+ <boolean>true</boolean>
+ </property>
+ <property name="bundledVM">
+ <string><![CDATA[OracleJRE180u92_macosx.vm]]></string>
</property>
<property name="withoutVmSearchOption">
- <short>13</short>
+ <short>10</short>
</property>
<property name="withVMSearchOption">
<short>21</short>
<boolean>true</boolean>
</property>
<property name="bundledVM">
- <string><![CDATA[SunJRE160_01iWin32.vm]]></string>
+ <string><![CDATA[OracleJRE8u92_windows(x86).vm]]></string>
</property>
<property name="withoutVmSearchOption">
<short>10</short>
<boolean>true</boolean>
</property>
<property name="buildWithVM">
- <boolean>true</boolean>
+ <boolean>false</boolean>
</property>
<property name="bundledVM">
<string><![CDATA[IBMJRE142AIX_ca1420-20040626.vm]]></string>
<boolean>true</boolean>
</property>
<property name="buildWithVM">
- <boolean>true</boolean>
+ <boolean>false</boolean>
</property>
<property name="bundledVM">
- <string><![CDATA[JRE16_16002HPUX11PA-RISC.vm]]></string>
+ <string><![CDATA[JRE16_16010HPUXPA-RISC.vm]]></string>
</property>
<property name="withoutVmSearchOption">
<short>10</short>
<boolean>true</boolean>
</property>
<property name="bundledVM">
- <string><![CDATA[SunJRE160_26LinuxINTEL.vm]]></string>
+ <string><![CDATA[OracleJRE180u92_Linux32.vm]]></string>
</property>
<property name="withoutVmSearchOption">
<short>10</short>
</property>
<property name="withVMSearchOption">
- <short>21</short>
+ <short>20</short>
</property>
<property name="win32InstallerLauncherType">
<short>90</short>
<boolean>true</boolean>
</property>
<property name="bundledVM">
- <string><![CDATA[SunJRE160_26SolarisSPARC.vm]]></string>
+ <string><![CDATA[OracleJRE8u5_SolarisSparc.vm]]></string>
</property>
<property name="withoutVmSearchOption">
<short>10</short>
<string><![CDATA[UNIX_with_VM]]></string>
</property>
<property name="buildNoVM">
- <boolean>false</boolean>
+ <boolean>true</boolean>
</property>
<property name="buildWithVM">
<boolean>true</boolean>
</property>
<property name="bundledVM">
- <string><![CDATA[SunJRE160_02LinuxINTEL.vm]]></string>
+ <string><![CDATA[OracleJRE180u92_Linux32.vm]]></string>
</property>
<property name="withoutVmSearchOption">
<short>10</short>
<string><![CDATA[Windows_Pure_64_Bit]]></string>
</property>
<property name="buildNoVM">
- <boolean>false</boolean>
+ <boolean>true</boolean>
</property>
<property name="buildWithVM">
- <boolean>false</boolean>
+ <boolean>true</boolean>
+ </property>
+ <property name="bundledVM">
+ <string><![CDATA[OracleJRE180u92_windows(x64).vm]]></string>
</property>
<property name="withoutVmSearchOption">
<short>10</short>
</property>
<property name="withVMSearchOption">
- <short>21</short>
+ <short>20</short>
</property>
<property name="win32InstallerLauncherType">
<short>90</short>
<boolean>true</boolean>
</property>
<property name="buildOutputLocation">
- <string><![CDATA[/home/cruisecontrol/checkout/release-jalview/utils/InstallAnywhere/Jalview_Build_Output]]></string>
+ <string><![CDATA[/opt/homes/cruisecontrol/live/cruisecontrol/checkout/next-release-jalview/utils/InstallAnywhere/Jalview_Build_Output]]></string>
</property>
<property name="relatedProjectSettings">
<object class="com.zerog.ia.installer.RelatedProjectSettings" objectID="97f2363da6ac">
<boolean>true</boolean>
</property>
<property name="credentialInformation">
- <object class="com.flexera.ia.vapp.datastructures.VMWareCredentialInformationImpl" objectID="eeb45609a007">
+ <object class="com.flexera.ia.vapp.datastructures.VMWareCredentialInformationImpl" objectID="eaa38cb2933b">
<property name="hostName">
<string><![CDATA[]]></string>
</property>
</method>
<method name="put">
<string><![CDATA[com.zerog.ia.installer.options.valid.vm.list]]></string>
- <string><![CDATA[1.6,1.7,1.8+]]></string>
+ <string><![CDATA[1.8+]]></string>
</method>
<method name="put">
<string><![CDATA[com.zerog.ia.project.build.last.date]]></string>
- <string><![CDATA[21 October 2013 14:27:40 o'clock BST]]></string>
+ <string><![CDATA[16 September 2015 18:09:53 o'clock BST]]></string>
</method>
<method name="put">
<string><![CDATA[com.zerog.ia.build.platform.windows.vm]]></string>
</method>
<method name="put">
<string><![CDATA[com.zerog.ia.project.save.last.date]]></string>
- <string><![CDATA[21 October 2013 14:27:40 o'clock BST]]></string>
+ <string><![CDATA[16 September 2015 18:09:53 o'clock BST]]></string>
</method>
<method name="put">
<string><![CDATA[com.zerog.ia.build.options.optimization.platform.cdrom]]></string>
</method>
<method name="put">
<string><![CDATA[com.zerog.ia.installer.options.platform.macosx.vm.version]]></string>
- <string><![CDATA[1.6+]]></string>
+ <string><![CDATA[1.8+]]></string>
</method>
<method name="put">
<string><![CDATA[com.zerog.ia.build.platform.java.novm]]></string>
<int>2</int>
</property>
<property name="minor">
- <int>8</int>
+ <int>9</int>
</property>
<property name="revision">
<int>0</int>
</property>
<property name="subRevision">
- <int>0</int>
+ <int>1</int>
</property>
</object>
</property>
+ <property name="upgradeCode">
+ <object class="com.zerog.registry.UUID">
+ <method name="update">
+ <string><![CDATA[fe7d6410-1ed5-11b2-a662-f4777f28dbfc]]></string>
+ </method>
+ </object>
+ </property>
<property name="supportURL">
<string><![CDATA[http://www.jalview.org/faq]]></string>
</property>
<string><![CDATA[jalview-discuss@jalview.org]]></string>
</property>
<property name="copyright">
- <string><![CDATA[2013]]></string>
+ <string><![CDATA[2015]]></string>
</property>
<property name="license">
<string><![CDATA[Commercial]]></string>
<property name="oldStyleInstallersEnabled">
<boolean>false</boolean>
</property>
+ <property name="upgradeSettings">
+ <object class="com.zerog.ia.installer.UpgradeSettings" objectID="1b941ce786e7">
+ <property name="enableUpgrade">
+ <boolean>false</boolean>
+ </property>
+ <property name="upgradeConfigurationsList">
+ <object class="java.util.ArrayList" list="true">
+ <method name="add">
+ <object class="com.zerog.ia.installer.UpgradeConfiguration" objectID="1b941ce886e7">
+ <property name="detectionBasedOn">
+ <string><![CDATA[PRODUCT_CODE]]></string>
+ </property>
+ <property name="requireValidationForPreviousProductCode">
+ <boolean>false</boolean>
+ </property>
+ <property name="maxVersion">
+ <object class="com.zerog.ia.installer.util.Version" objectID="1b941cea86e7">
+ <property name="major">
+ <int>1</int>
+ </property>
+ <property name="minor">
+ <int>0</int>
+ </property>
+ <property name="revision">
+ <int>0</int>
+ </property>
+ <property name="subRevision">
+ <int>0</int>
+ </property>
+ </object>
+ </property>
+ <property name="minVersion">
+ <object class="com.zerog.ia.installer.util.Version" objectID="1b941ce886e8">
+ <property name="major">
+ <int>1</int>
+ </property>
+ <property name="minor">
+ <int>0</int>
+ </property>
+ <property name="revision">
+ <int>0</int>
+ </property>
+ <property name="subRevision">
+ <int>0</int>
+ </property>
+ </object>
+ </property>
+ <property name="configurationName">
+ <string><![CDATA[Default Upgrade Configuration]]></string>
+ </property>
+ </object>
+ </method>
+ </object>
+ </property>
+ <property name="abortInstallationIfUninstallFails">
+ <boolean>true</boolean>
+ </property>
+ <property name="automaticallyRemoveAllExistingInstallations">
+ <boolean>true</boolean>
+ </property>
+ <property name="promptUserOnExistanceOfMultiplePreviousInstallations">
+ <boolean>false</boolean>
+ </property>
+ <property name="allowCustomizationOfUserInstallDirectory">
+ <boolean>false</boolean>
+ </property>
+ <property name="retainFeaturePreferences">
+ <boolean>false</boolean>
+ </property>
+ </object>
+ </property>
+ <property name="tomcatServerNamesList">
+ <object class="java.util.ArrayList" list="true"/>
+ </property>
<visualChildren>
<object class="com.zerog.ia.installer.InstallSet" objectID="fe7d6493a66a">
<property name="belongsToUninstallPhase">
<object refID="24485f8aa671"/>
<object refID="24485f89a672"/>
<object refID="24485f8aa672"/>
+ <object refID="244fff00ffff"/>
+ <object refID="244ffffaa672"/>
+ <object refID="244f00faa672"/>
<object refID="24485f8ba672"/>
<object refID="24485f8aa673"/>
<object refID="24485f8ba673"/>
<string><![CDATA[building.html]]></string>
</property>
<property name="fileSize">
- <long>4444</long>
+ <long>4447</long>
</property>
<property name="macBinary">
<boolean>false</boolean>
<object refID="f44ca391ab9f"/>
<object refID="f44ca392ab9f"/>
<object refID="f44ca393ab9f"/>
+ <object refID="f46c2f42ab93"/>
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<object class="com.zerog.ia.installer.actions.InstallFile" objectID="f44fc5b2aba1">
<property name="belongsToUninstallPhase">
<boolean>false</boolean>
<string><![CDATA[exampleFile_2_7.jar]]></string>
</property>
<property name="fileSize">
- <long>107135</long>
+ <long>107635</long>
</property>
<property name="macBinary">
<boolean>false</boolean>
<string><![CDATA[1gaq.txt]]></string>
</property>
<property name="fileSize">
- <long>56649</long>
+ <long>55958</long>
</property>
<property name="macBinary">
<boolean>false</boolean>
<string><![CDATA[uniref50.fa]]></string>
</property>
<property name="fileSize">
- <long>3039</long>
+ <long>2979</long>
</property>
<property name="macBinary">
<boolean>false</boolean>
<string><![CDATA[exampleFeatures.txt]]></string>
</property>
<property name="fileSize">
- <long>31397</long>
+ <long>31399</long>
</property>
<property name="macBinary">
<boolean>false</boolean>
<string><![CDATA[ferredoxin.nw]]></string>
</property>
<property name="fileSize">
- <long>392</long>
+ <long>391</long>
</property>
<property name="macBinary">
<boolean>false</boolean>
<int>0</int>
</property>
</object>
- <object refID="f46c2f42ab93"/>
<object class="com.zerog.ia.installer.actions.InstallDirectory" objectID="24485f85a670">
<property name="belongsToUninstallPhase">
<boolean>false</boolean>
<object refID="24485f8aa671"/>
<object refID="24485f89a672"/>
<object refID="24485f8aa672"/>
+ <object refID="244fff00ffff"/>
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<object refID="f44ca392ab9f"/>
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<object refID="f46c2f42ab93"/>
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<object class="com.zerog.ia.installer.actions.InstallDirectory" objectID="f44fc5d5aba1">
<boolean>false</boolean>
</property>
<property name="totalSize">
- <long>13096</long>
+ <long>30621</long>
</property>
<property name="macBinary">
<boolean>false</boolean>
<object refID="f44fc68baba3"/>
</visualChildren>
</object>
+ <object class="com.zerog.ia.installer.actions.InstallFile" objectID="ea43799f8a5c">
+ <property name="belongsToUninstallPhase">
+ <boolean>false</boolean>
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+ <property name="rollbackEnabledCancel">
+ <boolean>true</boolean>
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+ <property name="rollbackEnabledError">
+ <boolean>true</boolean>
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+ <property name="ruleExpression">
+ <string><![CDATA[]]></string>
+ </property>
+ <property name="unixPermissions">
+ <string><![CDATA[664]]></string>
+ </property>
+ <property name="sourceName">
+ <string><![CDATA[THIRDPARTYLIBS]]></string>
+ </property>
+ <property name="overrideUnixPermissions">
+ <boolean>false</boolean>
+ </property>
+ <property name="sourcePath">
+ <string><![CDATA[/opt/homes/cruisecontrol/live/cruisecontrol/checkout/next-release-jalview/]]></string>
+ </property>
+ <property name="shouldUninstall">
+ <boolean>true</boolean>
+ </property>
+ <property name="destinationName">
+ <string><![CDATA[THIRDPARTYLIBS]]></string>
+ </property>
+ <property name="fileSize">
+ <long>2612</long>
+ </property>
+ <property name="macBinary">
+ <boolean>false</boolean>
+ </property>
+ <property name="targetCheckKind">
+ <int>0</int>
+ </property>
+ </object>
+ <object class="com.zerog.ia.installer.actions.InstallFile" objectID="ea4379a48a5c">
+ <property name="belongsToUninstallPhase">
+ <boolean>false</boolean>
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+ <property name="rollbackEnabledCancel">
+ <boolean>true</boolean>
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+ <property name="rollbackEnabledError">
+ <boolean>true</boolean>
+ </property>
+ <property name="ruleExpression">
+ <string><![CDATA[]]></string>
+ </property>
+ <property name="unixPermissions">
+ <string><![CDATA[664]]></string>
+ </property>
+ <property name="sourceName">
+ <string><![CDATA[AUTHORS]]></string>
+ </property>
+ <property name="overrideUnixPermissions">
+ <boolean>false</boolean>
+ </property>
+ <property name="sourcePath">
+ <string><![CDATA[/opt/homes/cruisecontrol/live/cruisecontrol/checkout/next-release-jalview/]]></string>
+ </property>
+ <property name="shouldUninstall">
+ <boolean>true</boolean>
+ </property>
+ <property name="destinationName">
+ <string><![CDATA[AUTHORS]]></string>
+ </property>
+ <property name="fileSize">
+ <long>809</long>
+ </property>
+ <property name="macBinary">
+ <boolean>false</boolean>
+ </property>
+ <property name="targetCheckKind">
+ <int>0</int>
+ </property>
+ </object>
</installChildren>
</object>
<object class="com.zerog.ia.installer.InstallComponent" objectID="fe7d6497a66b">
<object refID="24485f85a670"/>
<object refID="f44fc598aba0"/>
<object refID="094ab0d49607"/>
+ <object refID="ea43799f8a5c"/>
+ <object refID="ea4379a48a5c"/>
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</object>
<object class="com.zerog.ia.installer.GhostDirectory" objectID="3cd94e29a677">
</visualChildren>
<installChildren>
<object refID="fe7d6493a66a"/>
- <object refID="ee9b98899f7a"/>
</installChildren>
</object>
</installationObjects>
git://source.jalview.org / jalview.git / blobdiff