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JAL-3111 fix libquagua dependency paths - needs to be checked on OSX InstallAnywhere
[jalview.git] / utils / InstallAnywhere / Jalview.iap_xml
diff --git a/utils/InstallAnywhere/Jalview.iap_xml b/utils/InstallAnywhere/Jalview.iap_xml
index d77a93b..70c12d5 100755 (executable)
--- a/utils/InstallAnywhere/Jalview.iap_xml
+++ b/utils/InstallAnywhere/Jalview.iap_xml
@@ -1,8 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!-- This script was automatically generated using InstallAnywhere 2014 Professional, Build 4783
      STATUS: Fully Functional LICENSED Edition
-     DATE:   Tue Dec 02 16:16:02 GMT 2014 -->
-<InstallAnywhere_Deployment_Project increments="5299">
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+     DATE:   Wed Sep 16 18:09:53 BST 2015 -->
+<InstallAnywhere_Deployment_Project increments="5904">
        <!-- ** DO NOT EDIT ** Essential authorization and configuration data ** DO NOT EDIT ** -->
        <essentialScriptInfo>
                <versionID major="16" minor="0" revision="0"/>
@@ -10,9 +26,9 @@
                <scriptID>12,42,11,85,78,76,73,67,69,78,83,69,68</scriptID>
                <buildID>3,13,71,76,105,110,117,120,44,32,50,46,54,46,51,50,45,51,53,56,46,54,46,50,46,101,108,54,46,120,56,54,95,54,52,44,32,97,109,100,54,52,59,32,74,97,118,97,32,49,46,55,46,48,95,54,48,44,32,79,114,97,99,108,101,32,67,111,114,112,111,114,97,116,105,111,110,44,32,104,116,116,112,58,47,47,106,97,118,97,46,111,114,97,99,108,101,46,99,111,109,47,59,32,101,110,44,32,85,110,107,110,111,119,110,59,32,73,83,79,45,56,56,53,57,45,49</buildID>
                <!-- The authorizationID may change between project saves and builds.  This does not effect the integrity of the project, nor do changes in this value represent changes in the actual InstallAnywhere project. -->
-               <authorizationID>1,0,0,64,13,-64,-128,0,80,127,118,101,93,105,116,96,121,48,48,49,56,52,67,98,113,112,112,37,82,101,96,63,55,-11,2,9,1,105,27,10,1,0,0</authorizationID>
+               <authorizationID>1,0,0,64,-35,32,64,-48,80,127,118,101,93,105,116,96,121,48,48,49,56,52,67,98,113,112,112,37,82,101,96,63,55,-11,2,9,13,114,23,15,1,0,0</authorizationID>
        </essentialScriptInfo>
-       <installationObjects uniqueObjects="225">
+       <installationObjects uniqueObjects="243">
                <object class="com.zerog.ia.installer.Installer" objectID="fe7d63eda660">
                        <property name="belongsToUninstallPhase">
                                <boolean>false</boolean>
@@ -184,7 +200,7 @@ Can be separated by colons (Mac OS/Unix) or semicolons (Windows)]]></string>
                                                        <method name="addElement">
                                                                <object class="com.zerog.ia.installer.util.LAXPropertyData" objectID="97fa91cfa6f7">
                                                                        <property name="propertyValue">
-                                                                               <string><![CDATA[268400000]]></string>
+                                                                               <string><![CDATA[1060000000]]></string>
                                                                        </property>
                                                                        <property name="propertyName">
                                                                                <string><![CDATA[lax.nl.java.option.java.heap.size.max]]></string>
@@ -238,7 +254,7 @@ it will search for ones in this list]]></string>
                                                        <method name="addElement">
                                                                <object class="com.zerog.ia.installer.util.LAXPropertyData" objectID="97f991ffa6f7">
                                                                        <property name="propertyValue">
-                                                                               <string><![CDATA[33554432]]></string>
+                                                                               <string><![CDATA[1000000000]]></string>
                                                                        </property>
                                                                        <property name="propertyName">
                                                                                <string><![CDATA[lax.nl.java.option.java.heap.size.initial]]></string>
@@ -262,6 +278,19 @@ and any path to a file to save to the file]]></string>
                                                                        </property>
                                                                </object>
                                                        </method>
+                                                       <method name="addElement">
+                                                               <object class="com.zerog.ia.installer.util.LAXPropertyData" objectID="e9482ad387eb">
+                                                                       <property name="propertyValue">
+                                                                               <string><![CDATA[$PLATFORM_JVM_OPTS$]]></string>
+                                                                       </property>
+                                                                       <property name="propertyName">
+                                                                               <string><![CDATA[lax.nl.java.option.additional]]></string>
+                                                                       </property>
+                                                                       <property name="propertyComment">
+                                                                               <string><![CDATA[specific launch options for the platform]]></string>
+                                                                       </property>
+                                                               </object>
+                                                       </method>
                                                </object>
                                        </property>
                                        <property name="shouldUninstall">
@@ -285,13 +314,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[logo.gif]]></string>
                                                        </property>
                                                        <property name="smallIconPath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/resources/images/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/resources/images/]]></string>
                                                        </property>
                                                        <property name="largeIconPath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/resources/images/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/resources/images/]]></string>
                                                        </property>
                                                        <property name="macOSXIconPath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
                                                        </property>
                                                        <property name="macOSXIconName">
                                                                <string><![CDATA[mac_logo.icns]]></string>
@@ -338,7 +367,7 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/dist/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/dist/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -353,7 +382,7 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[jalview.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>4232225</long>
+                                                               <long>5584573</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -390,7 +419,7 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -442,7 +471,7 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -457,7 +486,7 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[xercesImpl.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>1010204</long>
+                                                               <long>1367760</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -494,7 +523,7 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -546,7 +575,7 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -598,7 +627,7 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -613,7 +642,7 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[xml-apis.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>124344</long>
+                                                               <long>220536</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -650,7 +679,7 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -702,7 +731,7 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -754,7 +783,7 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -806,7 +835,7 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -858,7 +887,7 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -910,7 +939,7 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -925,7 +954,579 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[wsdl4j.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>161701</long>
+                                                               <long>161701</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="24485f87a670">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[activation.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[activation.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>49713</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="24485f8aa672">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[slf4j-api-1.7.7.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[slf4j-api-1.7.7.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>29257</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="244fff00ffff">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[jsoup-1.8.1.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[jsoup-1.8.1.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>300844</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="244ffffaa672">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[log4j-to-slf4j-2.0-rc2.jar]]></string>
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+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[log4j-to-slf4j-2.0-rc2.jar]]></string>
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+                                                       <property name="fileSize">
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+                                                       <property name="macBinary">
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+                                                       <property name="targetCheckKind">
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+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="244f00faa672">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
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+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[slf4j-log4j12-1.7.7.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[slf4j-log4j12-1.7.7.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>8870</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="88d4aff3b0c6">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[Jmol-14.6.4_2016.10.26.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[Jmol-14.6.4_2016.10.26.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>5417196</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="b1a16839a449">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[vamsas-client.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[vamsas-client.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>682375</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="495aeddb8b3d">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[JGoogleAnalytics_0.3.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[JGoogleAnalytics_0.3.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>8300</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="4996716cba8e">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[jabaws-min-client-2.2.0.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[jabaws-min-client-2.2.0.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>601804</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17529b9c">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[httpcore-4.0.1.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[httpcore-4.0.1.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>172888</long>
+                                                       </property>
+                                                       <property name="macBinary">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="targetCheckKind">
+                                                               <int>0</int>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17519b9c">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[]]></string>
+                                                       </property>
+                                                       <property name="unixPermissions">
+                                                               <string><![CDATA[664]]></string>
+                                                       </property>
+                                                       <property name="sourceName">
+                                                               <string><![CDATA[httpclient-4.0.3.jar]]></string>
+                                                       </property>
+                                                       <property name="overrideUnixPermissions">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="sourcePath">
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+                                                       </property>
+                                                       <property name="shouldUninstall">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="destinationName">
+                                                               <string><![CDATA[httpclient-4.0.3.jar]]></string>
+                                                       </property>
+                                                       <property name="fileSize">
+                                                               <long>292893</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -939,7 +1540,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="24485f87a670">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17539b9c">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -956,13 +1557,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[activation.jar]]></string>
+                                                               <string><![CDATA[httpmime-4.0.3.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -974,10 +1575,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[activation.jar]]></string>
+                                                               <string><![CDATA[httpmime-4.0.3.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>49713</long>
+                                                               <long>25447</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -991,7 +1592,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="24485f8aa672">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17529b9d">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1008,13 +1609,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[slf4j-api-1.7.7.jar]]></string>
+                                                               <string><![CDATA[apache-mime4j-0.6.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1026,10 +1627,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[slf4j-api-1.7.7.jar]]></string>
+                                                               <string><![CDATA[apache-mime4j-0.6.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>348699</long>
+                                                               <long>345048</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1040,10 +1641,10 @@ and any path to a file to save to the file]]></string>
                                                        <property name="ruleExpression">
                                                                <string><![CDATA[]]></string>
                                                        </property>
-                                               </object>                               
-                                       </method>               
+                                               </object>
+                                       </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="244fff00ffff">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a521fb6bc">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1060,13 +1661,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[jsoup-1.8.1.jar]]></string>
+                                                               <string><![CDATA[miglayout-4.0-swing.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1078,10 +1679,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[jsoup-1.8.1.jar]]></string>
+                                                               <string><![CDATA[miglayout-4.0-swing.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>348699</long>
+                                                               <long>77291</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1095,7 +1696,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="244ffffaa672">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a5220b6bc1">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1112,13 +1713,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[log4j-to-slf4j-2.0-rc2.jar]]></string>
+                                                               <string><![CDATA[commons-codec-1.3.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1130,10 +1731,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[log4j-to-slf4j-2.0-rc2.jar]]></string>
+                                                               <string><![CDATA[commons-codec-1.3.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>348699</long>
+                                                               <long>46725</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1147,7 +1748,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="244f00faa672">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a5220b6bc">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1164,13 +1765,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[slf4j-log4j12-1.7.7.jar]]></string>
+                                                               <string><![CDATA[jswingreader-0.3.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1182,10 +1783,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[slf4j-log4j12-1.7.7.jar]]></string>
+                                                               <string><![CDATA[jswingreader-0.3.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>348699</long>
+                                                               <long>86618</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1199,7 +1800,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="88d4aff3b0c6">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="df3a5220b6bc">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1216,13 +1817,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[Jmol-12.2.4.jar]]></string>
+                                                               <string><![CDATA[VARNAv3-93.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1234,10 +1835,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[Jmol-12.2.4.jar]]></string>
+                                                               <string><![CDATA[VARNAv3-93.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>4938027</long>
+                                                               <long>695802</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1251,7 +1852,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="b1a16838a449">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f44ca393ab9f">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1268,13 +1869,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[castor-1.1-cycle-xml.jar]]></string>
+                                                               <string><![CDATA[groovy-all-2.4.12-indy.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1286,10 +1887,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[castor-1.1-cycle-xml.jar]]></string>
+                                                               <string><![CDATA[groovy-all-2.4.12-indy.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>1035998</long>
+                                                               <long>6149494</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1303,7 +1904,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="b1a16839a449">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1f46cffffab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1320,13 +1921,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[vamsas-client.jar]]></string>
+                                                               <string><![CDATA[jfreesvg-2.1.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1338,10 +1939,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[vamsas-client.jar]]></string>
+                                                               <string><![CDATA[jfreesvg-2.1.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>682375</long>
+                                                               <long>49768</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1355,7 +1956,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="495aeddb8b3d">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1f46efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1372,13 +1973,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[JGoogleAnalytics_0.3.jar]]></string>
+                                                               <string><![CDATA[json_simple-1.1.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1390,10 +1991,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[JGoogleAnalytics_0.3.jar]]></string>
+                                                               <string><![CDATA[json_simple-1.1.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>8300</long>
+                                                               <long>16046</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1407,7 +2008,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="4996716cba8e">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="841f46efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1424,13 +2025,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[min-jabaws-client-2.1.0.jar]]></string>
+                                                               <string><![CDATA[libquaqua64-8.0.jnilib.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1442,10 +2043,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[min-jabaws-client-2.1.0.jar]]></string>
+                                                               <string><![CDATA[libquaqua64-8.0.jnilib.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>133065</long>
+                                                               <long>16046</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1459,7 +2060,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17529b9c">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="9a1f46efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1476,13 +2077,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[httpcore-4.0.1.jar]]></string>
+                                                               <string><![CDATA[libquaqua-8.0.jnilib.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1494,10 +2095,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[httpcore-4.0.1.jar]]></string>
+                                                               <string><![CDATA[libquaqua-8.0.jnilib.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>172888</long>
+                                                               <long>16046</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1510,8 +2111,61 @@ and any path to a file to save to the file]]></string>
                                                        </property>
                                                </object>
                                        </method>
+
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17519b9c">
+            <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="9a1f46efeef911a">
+              <property name="belongsToUninstallPhase">
+                <boolean>false</boolean>
+              </property>
+              <property name="rollbackEnabledCancel">
+                <boolean>true</boolean>
+              </property>
+              <property name="rollbackEnabledError">
+                <boolean>true</boolean>
+              </property>
+              <property name="ruleExpression">
+                <string><![CDATA[]]></string>
+              </property>
+              <property name="unixPermissions">
+                <string><![CDATA[664]]></string>
+              </property>
+              <property name="sourceName">
+                <string><![CDATA[VAqua5-patch.jar]]></string>
+              </property>
+              <property name="overrideUnixPermissions">
+                <boolean>false</boolean>
+              </property>
+              <property name="sourcePath">
+                <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+              </property>
+              <property name="shouldUninstall">
+                <boolean>true</boolean>
+              </property>
+              <property name="rollbackEnabledCancel">
+                <boolean>true</boolean>
+              </property>
+              <property name="rollbackEnabledError">
+                <boolean>true</boolean>
+              </property>
+              <property name="destinationName">
+                <string><![CDATA[VAqua5-patch.jar]]></string>
+              </property>
+              <property name="fileSize">
+                <long>1370564</long>
+              </property>
+              <property name="macBinary">
+                <boolean>false</boolean>
+              </property>
+              <property name="targetCheckKind">
+                <int>0</int>
+              </property>
+              <property name="ruleExpression">
+                <string><![CDATA[]]></string>
+              </property>
+            </object>
+          </method>
+          <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1936efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1528,13 +2182,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[httpclient-4.0.3.jar]]></string>
+                                                               <string><![CDATA[quaqua-filechooser-only-8.0.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1546,10 +2200,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[httpclient-4.0.3.jar]]></string>
+                                                               <string><![CDATA[quaqua-filechooser-only-8.0.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>292893</long>
+                                                               <long>660179</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1563,7 +2217,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17539b9c">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="10936efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1580,13 +2234,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[httpmime-4.0.3.jar]]></string>
+                                                               <string><![CDATA[jersey-client-1.19.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1598,10 +2252,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[httpmime-4.0.3.jar]]></string>
+                                                               <string><![CDATA[jersey-client-1.19.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>25447</long>
+                                                               <long>134021</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1615,7 +2269,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17529b9d">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="11936efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1632,13 +2286,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[apache-mime4j-0.6.jar]]></string>
+                                                               <string><![CDATA[jersey-core-1.19.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1650,10 +2304,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[apache-mime4j-0.6.jar]]></string>
+                                                               <string><![CDATA[jersey-core-1.19.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>345048</long>
+                                                               <long>436689</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1667,7 +2321,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a521fb6bc">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="12936efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1684,13 +2338,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[miglayout-4.0-swing.jar]]></string>
+                                                               <string><![CDATA[jersey-json-1.19.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1702,10 +2356,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[miglayout-4.0-swing.jar]]></string>
+                                                               <string><![CDATA[jersey-json-1.19.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>77291</long>
+                                                               <long>165345</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1719,7 +2373,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a5220b6bc1">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="13936efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1736,13 +2390,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[commons-codec-1.3.jar]]></string>
+                                                               <string><![CDATA[java-json.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1754,10 +2408,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[commons-codec-1.3.jar]]></string>
+                                                               <string><![CDATA[java-json.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>46725</long>
+                                                               <long>84697</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1771,7 +2425,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a5220b6bc">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="14936efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1788,13 +2442,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[jswingreader-0.3.jar]]></string>
+                                                               <string><![CDATA[jsr311-api-1.1.1.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1806,10 +2460,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[jswingreader-0.3.jar]]></string>
+                                                               <string><![CDATA[jsr311-api-1.1.1.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>86618</long>
+                                                               <long>46367</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1823,7 +2477,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="df3a5220b6bc">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="15936efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1840,13 +2494,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[VARNAv3-91.jar]]></string>
+                                                               <string><![CDATA[jetty-http-9.2.10.v20150310.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1858,10 +2512,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[VARNAv3-91.jar]]></string>
+                                                               <string><![CDATA[jetty-http-9.2.10.v20150310.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>663408</long>
+                                                               <long>105748</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1875,7 +2529,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f44ca391ab9f">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="16936efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1892,13 +2546,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[spring-web-3.0.5.RELEASE.jar]]></string>
+                                                               <string><![CDATA[jetty-io-9.2.10.v20150310.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1910,10 +2564,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[spring-web-3.0.5.RELEASE.jar]]></string>
+                                                               <string><![CDATA[jetty-io-9.2.10.v20150310.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>395587</long>
+                                                               <long>108132</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1927,7 +2581,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f44ca392ab9f">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="17936efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1944,13 +2598,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[jdas-1.0.4.jar]]></string>
+                                                               <string><![CDATA[jetty-server-9.2.10.v20150310.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -1962,10 +2616,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[jdas-1.0.4.jar]]></string>
+                                                               <string><![CDATA[jetty-server-9.2.10.v20150310.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>249906</long>
+                                                               <long>418917</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1979,7 +2633,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f44ca393ab9f">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="18936efeefab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -1996,13 +2650,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[groovy-all-1.8.2.jar]]></string>
+                                                               <string><![CDATA[jetty-util-9.2.10.v20150310.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -2014,10 +2668,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[groovy-all-1.8.2.jar]]></string>
+                                                               <string><![CDATA[jetty-util-9.2.10.v20150310.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>6149494</long>
+                                                               <long>356253</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -2031,7 +2685,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f46c2f42ab93">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1000ddddfab93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -2048,13 +2702,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[spring-core-3.0.5.RELEASE.jar]]></string>
+                                                               <string><![CDATA[htsjdk-2.12.0.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -2066,10 +2720,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[spring-core-3.0.5.RELEASE.jar]]></string>
+                                                               <string><![CDATA[htsjdk-2.12.0.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>382442</long>
+                                                               <long>16046</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -2083,7 +2737,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1f46cffffab93">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1000ddddfb93">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -2100,13 +2754,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[jfreesvg-2.1.jar]]></string>
+                                                               <string><![CDATA[intervalstore-v0.4.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -2118,10 +2772,10 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[jfreesvg-2.1.jar]]></string>
+                                                               <string><![CDATA[intervalstore-v0.4.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>49768</long>
+                                                               <long>26303</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -2135,7 +2789,7 @@ and any path to a file to save to the file]]></string>
                                                </object>
                                        </method>
                                        <method name="addElement">
-                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1f46efeefab93">
+                                               <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1000ddddfab939">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
                                                        </property>
@@ -2152,13 +2806,13 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[json_simple-1.1.jar]]></string>
+                                                               <string><![CDATA[servlet-api-3.1.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
                                                        </property>
                                                        <property name="sourcePath">
-                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
                                                        </property>
                                                        <property name="shouldUninstall">
                                                                <boolean>true</boolean>
@@ -2170,7 +2824,7 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[json_simple-1.1.jar]]></string>
+                                                               <string><![CDATA[servlet-api-3.1.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
                                                                <long>16046</long>
@@ -2192,7 +2846,7 @@ and any path to a file to save to the file]]></string>
                                <string><![CDATA[The installer cannot run on your configuration. It will now quit.]]></string>
                        </property>
                        <property name="userSplashPath">
-                               <string><![CDATA[/home/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
+                               <string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
                        </property>
                        <property name="userSplashName">
                                <string><![CDATA[jalview.gif]]></string>
@@ -2529,6 +3183,94 @@ You may cancel this installation at any time by clicking the 'Cancel' button.]]>
                                                </object>
                                        </method>
                                        <method name="addElement">
+                                               <object class="com.zerog.ia.installer.actions.EditVariableTable" objectID="ea739b658d07">
+                                                       <property name="belongsToUninstallPhase">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledCancel">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="rollbackEnabledError">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="ruleExpression">
+                                                               <string><![CDATA[CP904]]></string>
+                                                       </property>
+                                                       <property name="name">
+                                                               <string><![CDATA[PLATFORM_JVM_OPTS]]></string>
+                                                       </property>
+                                                       <property name="value">
+                                                               <string><![CDATA[-Xdock:name=Jalview -Xdock:icon=$USER_INSTALL_DIR$/Jalview.app/Contents/Resources/LaunchAnywhere.icns]]></string>
+                                                       </property>
+                                                       <property name="passByValue">
+                                                               <boolean>true</boolean>
+                                                       </property>
+                                                       <property name="substituteUnknownVariable">
+                                                               <boolean>false</boolean>
+                                                       </property>
+                                                       <rules logicalOperation="AND">
+                                                               <object class="com.zerog.ia.installer.rules.PlatformChk" objectID="ea74fe6b8d07">
+                                                                       <property name="belongsToUninstallPhase">
+                                                                               <boolean>false</boolean>
+                                                                       </property>
+                                                                       <property name="rollbackEnabledCancel">
+                                                                               <boolean>true</boolean>
+                                                                       </property>
+                                                                       <property name="rollbackEnabledError">
+                                                                               <boolean>true</boolean>
+                                                                       </property>
+                                                                       <property name="ruleExpression">
+                                                                               <string><![CDATA[]]></string>
+                                                                       </property>
+                                                                       <property name="installOnPlatformList">
+                                                                               <object class="java.util.Vector">
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[Mac OS X]]></string>
+                                                                                       </method>
+                                                                               </object>
+                                                                       </property>
+                                                                       <property name="doNotInstallOnPlatformList">
+                                                                               <object class="java.util.Vector">
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[^Windows.*]]></string>
+                                                                                       </method>
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[Solaris]]></string>
+                                                                                       </method>
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[SunOS]]></string>
+                                                                                       </method>
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[HP-UX]]></string>
+                                                                                       </method>
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[Linux]]></string>
+                                                                                       </method>
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[AIX]]></string>
+                                                                                       </method>
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[FreeBSD]]></string>
+                                                                                       </method>
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[NetWare]]></string>
+                                                                                       </method>
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[OS/400]]></string>
+                                                                                       </method>
+                                                                                       <method name="addElement">
+                                                                                               <string><![CDATA[Unlisted Platforms]]></string>
+                                                                                       </method>
+                                                                               </object>
+                                                                       </property>
+                                                                       <property name="ruleId">
+                                                                               <string><![CDATA[CP904]]></string>
+                                                                       </property>
+                                                               </object>
+                                                       </rules>
+                                               </object>
+                                       </method>
+                                       <method name="addElement">
                                                <object class="com.zerog.ia.installer.actions.InstallSummary" objectID="fe7d64bfa66c">
                                                        <property name="belongsToUninstallPhase">
                                                                <boolean>false</boolean>
@@ -3001,7 +3743,7 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="bundledVM">
-                                                                                               <string><![CDATA[OracleJRE8u5_Macosx.vm]]></string>
+                                                                                               <string><![CDATA[OracleJRE180u92_macosx.vm]]></string>
                                                                                        </property>
                                                                                        <property name="withoutVmSearchOption">
                                                                                                <short>10</short>
@@ -3038,7 +3780,7 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="bundledVM">
-                                                                                               <string><![CDATA[SunJRE170_03Win32.vm]]></string>
+                                                                                               <string><![CDATA[OracleJRE8u92_windows(x86).vm]]></string>
                                                                                        </property>
                                                                                        <property name="withoutVmSearchOption">
                                                                                                <short>10</short>
@@ -3109,10 +3851,10 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="buildWithVM">
-                                                                                               <boolean>true</boolean>
+                                                                                               <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="bundledVM">
-                                                                                               <string><![CDATA[JRE16_16002HPUX11PA-RISC.vm]]></string>
+                                                                                               <string><![CDATA[JRE16_16010HPUXPA-RISC.vm]]></string>
                                                                                        </property>
                                                                                        <property name="withoutVmSearchOption">
                                                                                                <short>10</short>
@@ -3149,7 +3891,7 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="bundledVM">
-                                                                                               <string><![CDATA[ORACLEJRE7u60_linux32.vm]]></string>
+                                                                                               <string><![CDATA[OracleJRE180u92_Linux32.vm]]></string>
                                                                                        </property>
                                                                                        <property name="withoutVmSearchOption">
                                                                                                <short>10</short>
@@ -3257,7 +3999,7 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="bundledVM">
-                                                                                               <string><![CDATA[ORACLEJRE7u60_linux32.vm]]></string>
+                                                                                               <string><![CDATA[OracleJRE180u92_Linux32.vm]]></string>
                                                                                        </property>
                                                                                        <property name="withoutVmSearchOption">
                                                                                                <short>10</short>
@@ -3328,7 +4070,7 @@ Press "Done" to quit the installer.]]></string>
                                                                                                <boolean>true</boolean>
                                                                                        </property>
                                                                                        <property name="bundledVM">
-                                                                                               <string><![CDATA[OracleJRE8u5_windows(x64).vm]]></string>
+                                                                                               <string><![CDATA[OracleJRE180u92_windows(x64).vm]]></string>
                                                                                        </property>
                                                                                        <property name="withoutVmSearchOption">
                                                                                                <short>10</short>
@@ -3397,7 +4139,7 @@ Press "Done" to quit the installer.]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="buildOutputLocation">
-                                                               <string><![CDATA[/home/cruisecontrol/checkout/release-jalview/utils/InstallAnywhere/Jalview_Build_Output]]></string>
+                                                               <string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/Jalview_Build_Output]]></string>
                                                        </property>
                                                        <property name="relatedProjectSettings">
                                                                <object class="com.zerog.ia.installer.RelatedProjectSettings" objectID="97f2363da6ac">
@@ -4303,7 +5045,7 @@ Press "Done" to quit the installer.]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="credentialInformation">
-                                                               <object class="com.flexera.ia.vapp.datastructures.VMWareCredentialInformationImpl" objectID="1f4abcab8706">
+                                                               <object class="com.flexera.ia.vapp.datastructures.VMWareCredentialInformationImpl" objectID="eaa38cb2933b">
                                                                        <property name="hostName">
                                                                                <string><![CDATA[]]></string>
                                                                        </property>
@@ -4425,11 +5167,11 @@ Press "Done" to quit the installer.]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.installer.options.valid.vm.list]]></string>
-                                               <string><![CDATA[1.7+]]></string>
+                                               <string><![CDATA[1.8*]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.project.build.last.date]]></string>
-                                               <string><![CDATA[21 October 2013 14:27:40 o'clock BST]]></string>
+                                               <string><![CDATA[16 September 2015 18:09:53 o'clock BST]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.build.platform.windows.vm]]></string>
@@ -4497,7 +5239,7 @@ Press "Done" to quit the installer.]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.project.save.last.date]]></string>
-                                               <string><![CDATA[02 December 2014 16:16:01 o'clock GMT]]></string>
+                                               <string><![CDATA[16 September 2015 18:09:53 o'clock BST]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.build.options.optimization.platform.cdrom]]></string>
@@ -4521,7 +5263,7 @@ Press "Done" to quit the installer.]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.installer.options.platform.macosx.vm.version]]></string>
-                                               <string><![CDATA[1.7+]]></string>
+                                               <string><![CDATA[1.8*]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.build.platform.java.novm]]></string>
@@ -4561,7 +5303,7 @@ Press "Done" to quit the installer.]]></string>
                                                <boolean>true</boolean>
                                        </property>
                                        <property name="backgroundImagePath">
-                                               <string><![CDATA[/home/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
+                                               <string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
                                        </property>
                                        <property name="backgroundImageName">
                                                <string><![CDATA[align.gif]]></string>
@@ -4775,13 +5517,13 @@ Press "Done" to quit the installer.]]></string>
                                                                <int>2</int>
                                                        </property>
                                                        <property name="minor">
-                                                               <int>8</int>
+                                                               <int>9</int>
                                                        </property>
                                                        <property name="revision">
-                                                               <int>2</int>
+                                                               <int>0</int>
                                                        </property>
                                                        <property name="subRevision">
-                                                               <int>0</int>
+                                                               <int>1</int>
                                                        </property>
                                                </object>
                                        </property>
@@ -4812,7 +5554,7 @@ Press "Done" to quit the installer.]]></string>
                                                <string><![CDATA[jalview-discuss@jalview.org]]></string>
                                        </property>
                                        <property name="copyright">
-                                               <string><![CDATA[2014]]></string>
+                                               <string><![CDATA[2015]]></string>
                                        </property>
                                        <property name="license">
                                                <string><![CDATA[Commercial]]></string>
@@ -6376,17 +7118,16 @@ and any path to a file to read from that file]]></string>
                                                                                <object refID="24485f8aa671"/>
                                                                                <object refID="24485f89a672"/>
                                                                                <object refID="24485f8aa672"/>
-
                                                                                <object refID="244fff00ffff"/>
-                                                           <object refID="244ffffaa672"/>
-                                                           <object refID="244f00faa672"/>
-
+                                                                               <object refID="244ffffaa672"/>
+                                                                               <object refID="244f00faa672"/>
                                                                                <object refID="24485f8ba672"/>
                                                                                <object refID="24485f8aa673"/>
                                                                                <object refID="24485f8ba673"/>
                                                                                <object refID="24485f8ca673"/>
                                                                                <object refID="24485f8ba674"/>
                                                                                <object refID="24485f8ca674"/>
+                                                                               <object refID="9a1f46efeef911a"/>
                                                                                <object class="com.zerog.ia.installer.actions.CreateShortcut" objectID="3cd8e2ffa672">
                                                                                        <property name="belongsToUninstallPhase">
                                                                                                <boolean>false</boolean>
@@ -6448,7 +7189,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6489,7 +7230,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6530,7 +7271,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/doc/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/doc/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6539,7 +7280,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <string><![CDATA[building.html]]></string>
                                                                                        </property>
                                                                                        <property name="fileSize">
-                                                                                               <long>4444</long>
+                                                                                               <long>4447</long>
                                                                                        </property>
                                                                                        <property name="macBinary">
                                                                                                <boolean>false</boolean>
@@ -6549,7 +7290,6 @@ and any path to a file to read from that file]]></string>
                                                                                        </property>
                                                                                </object>
                                                                                <object refID="88d4aff3b0c6"/>
-                                                                               <object refID="b1a16838a449"/>
                                                                                <object refID="b1a16839a449"/>
                                                                                <object refID="495aeddb8b3d"/>
                                                                                <object refID="4996716cba8e"/>
@@ -6561,12 +7301,24 @@ and any path to a file to read from that file]]></string>
                                                                                <object refID="aa3a5220b6bc"/>
                                                                                <object refID="df3a5220b6bc"/>
                                                                                <object refID="aa3a5220b6bc1"/>
-                                                                               <object refID="f44ca391ab9f"/>
-                                                                               <object refID="f44ca392ab9f"/>
+
                                                                                <object refID="f44ca393ab9f"/>
-                                                                               <object refID="f46c2f42ab93"/>
+
                                                                                <object refID="1f46cffffab93"/>
                                                                                <object refID="1f46efeefab93"/>
+                                                                               <object refID="1936efeefab93"/>
+                                                                               <object refID="1000ddddfab93"/>
+                                                                               <object refID="1000ddddfb93"/>
+                                                                               <object refID="1000ddddfab939"/>
+                                                                               <object refID="10936efeefab93"/>
+                                                                               <object refID="11936efeefab93"/>
+                                                                               <object refID="12936efeefab93"/>
+                                                                               <object refID="13936efeefab93"/>
+                                                                               <object refID="14936efeefab93"/>
+                                                                               <object refID="15936efeefab93"/>
+                                                                               <object refID="16936efeefab93"/>
+                                                                               <object refID="17936efeefab93"/>
+                                                                               <object refID="18936efeefab93"/>
                                                                                <object class="com.zerog.ia.installer.actions.InstallFile" objectID="f44fc5b2aba1">
                                                                                        <property name="belongsToUninstallPhase">
                                                                                                <boolean>false</boolean>
@@ -6590,7 +7342,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6631,7 +7383,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6672,7 +7424,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6713,7 +7465,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6754,7 +7506,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6769,7 +7521,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <string><![CDATA[exampleFile_2_7.jar]]></string>
                                                                                        </property>
                                                                                        <property name="fileSize">
-                                                                                               <long>107135</long>
+                                                                                               <long>107635</long>
                                                                                        </property>
                                                                                        <property name="macBinary">
                                                                                                <boolean>false</boolean>
@@ -6804,7 +7556,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6813,7 +7565,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <string><![CDATA[1gaq.txt]]></string>
                                                                                        </property>
                                                                                        <property name="fileSize">
-                                                                                               <long>56649</long>
+                                                                                               <long>55958</long>
                                                                                        </property>
                                                                                        <property name="macBinary">
                                                                                                <boolean>false</boolean>
@@ -6845,7 +7597,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6854,7 +7606,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <string><![CDATA[uniref50.fa]]></string>
                                                                                        </property>
                                                                                        <property name="fileSize">
-                                                                                               <long>3039</long>
+                                                                                               <long>2979</long>
                                                                                        </property>
                                                                                        <property name="macBinary">
                                                                                                <boolean>false</boolean>
@@ -6886,7 +7638,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6927,7 +7679,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -6936,7 +7688,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <string><![CDATA[exampleFeatures.txt]]></string>
                                                                                        </property>
                                                                                        <property name="fileSize">
-                                                                                               <long>31397</long>
+                                                                                               <long>31399</long>
                                                                                        </property>
                                                                                        <property name="macBinary">
                                                                                                <boolean>false</boolean>
@@ -6968,7 +7720,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -7009,7 +7761,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -7018,7 +7770,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <string><![CDATA[ferredoxin.nw]]></string>
                                                                                        </property>
                                                                                        <property name="fileSize">
-                                                                                               <long>392</long>
+                                                                                               <long>391</long>
                                                                                        </property>
                                                                                        <property name="macBinary">
                                                                                                <boolean>false</boolean>
@@ -7050,7 +7802,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -7091,7 +7843,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/lib]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/lib]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -7118,14 +7870,15 @@ and any path to a file to read from that file]]></string>
                                                                                                <object refID="24485f89a672"/>
                                                                                                <object refID="24485f8aa672"/>
                                                                                                <object refID="244fff00ffff"/>
-                                                                       <object refID="244ffffaa672"/>
-                                                                       <object refID="244f00faa672"/>
+                                                                                               <object refID="244ffffaa672"/>
+                                                                                               <object refID="244f00faa672"/>
                                                                                                <object refID="24485f8ba672"/>
                                                                                                <object refID="24485f8aa673"/>
                                                                                                <object refID="24485f8ba673"/>
                                                                                                <object refID="24485f8ca673"/>
                                                                                                <object refID="24485f8ba674"/>
                                                                                                <object refID="24485f8ca674"/>
+                                                                                               <object refID="9a1f46efeef911a"/>
                                                                                                <object refID="b1a16838a449"/>
                                                                                                <object refID="b1a16839a449"/>
                                                                                                <object refID="495aeddb8b3d"/>
@@ -7144,6 +7897,18 @@ and any path to a file to read from that file]]></string>
                                                                                                <object refID="f46c2f42ab93"/>
                                                                                                <object refID="1f46cffffab93"/>
                                                                                                <object refID="1f46efeefab93"/>
+                                                                                               <object refID="1936efeefab93"/>
+                                                                                               <object refID="1000ddddfab93"/>
+                                                                                               <object refID="1000ddddfab939"/>
+                                                                                               <object refID="10936efeefab93"/>
+                                                                                               <object refID="11936efeefab93"/>
+                                                                                               <object refID="12936efeefab93"/>
+                                                                                               <object refID="13936efeefab93"/>
+                                                                                               <object refID="14936efeefab93"/>
+                                                                                               <object refID="15936efeefab93"/>
+                                                                                               <object refID="16936efeefab93"/>
+                                                                                               <object refID="17936efeefab93"/>
+                                                                                               <object refID="18936efeefab93"/>
                                                                                        </visualChildren>
                                                                                </object>
                                                                                <object class="com.zerog.ia.installer.actions.InstallDirectory" objectID="f44fc5d5aba1">
@@ -7169,7 +7934,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples/groovy]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples/groovy]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>true</boolean>
@@ -7181,7 +7946,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="totalSize">
-                                                                                               <long>1</long>
+                                                                                               <long>30621</long>
                                                                                        </property>
                                                                                        <property name="macBinary">
                                                                                                <boolean>false</boolean>
@@ -7210,7 +7975,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <boolean>false</boolean>
                                                                                        </property>
                                                                                        <property name="sourcePath">
-                                                                                               <string><![CDATA[/home/cruisecontrol/jalview/examples]]></string>
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/examples]]></string>
                                                                                        </property>
                                                                                        <property name="shouldUninstall">
                                                                                                <boolean>false</boolean>
@@ -7243,6 +8008,88 @@ and any path to a file to read from that file]]></string>
                                                                                                <object refID="f44fc68baba3"/>
                                                                                        </visualChildren>
                                                                                </object>
+                                                                               <object class="com.zerog.ia.installer.actions.InstallFile" objectID="ea43799f8a5c">
+                                                                                       <property name="belongsToUninstallPhase">
+                                                                                               <boolean>false</boolean>
+                                                                                       </property>
+                                                                                       <property name="rollbackEnabledCancel">
+                                                                                               <boolean>true</boolean>
+                                                                                       </property>
+                                                                                       <property name="rollbackEnabledError">
+                                                                                               <boolean>true</boolean>
+                                                                                       </property>
+                                                                                       <property name="ruleExpression">
+                                                                                               <string><![CDATA[]]></string>
+                                                                                       </property>
+                                                                                       <property name="unixPermissions">
+                                                                                               <string><![CDATA[664]]></string>
+                                                                                       </property>
+                                                                                       <property name="sourceName">
+                                                                                               <string><![CDATA[THIRDPARTYLIBS]]></string>
+                                                                                       </property>
+                                                                                       <property name="overrideUnixPermissions">
+                                                                                               <boolean>false</boolean>
+                                                                                       </property>
+                                                                                       <property name="sourcePath">
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/]]></string>
+                                                                                       </property>
+                                                                                       <property name="shouldUninstall">
+                                                                                               <boolean>true</boolean>
+                                                                                       </property>
+                                                                                       <property name="destinationName">
+                                                                                               <string><![CDATA[THIRDPARTYLIBS]]></string>
+                                                                                       </property>
+                                                                                       <property name="fileSize">
+                                                                                               <long>2612</long>
+                                                                                       </property>
+                                                                                       <property name="macBinary">
+                                                                                               <boolean>false</boolean>
+                                                                                       </property>
+                                                                                       <property name="targetCheckKind">
+                                                                                               <int>0</int>
+                                                                                       </property>
+                                                                               </object>
+                                                                               <object class="com.zerog.ia.installer.actions.InstallFile" objectID="ea4379a48a5c">
+                                                                                       <property name="belongsToUninstallPhase">
+                                                                                               <boolean>false</boolean>
+                                                                                       </property>
+                                                                                       <property name="rollbackEnabledCancel">
+                                                                                               <boolean>true</boolean>
+                                                                                       </property>
+                                                                                       <property name="rollbackEnabledError">
+                                                                                               <boolean>true</boolean>
+                                                                                       </property>
+                                                                                       <property name="ruleExpression">
+                                                                                               <string><![CDATA[]]></string>
+                                                                                       </property>
+                                                                                       <property name="unixPermissions">
+                                                                                               <string><![CDATA[664]]></string>
+                                                                                       </property>
+                                                                                       <property name="sourceName">
+                                                                                               <string><![CDATA[AUTHORS]]></string>
+                                                                                       </property>
+                                                                                       <property name="overrideUnixPermissions">
+                                                                                               <boolean>false</boolean>
+                                                                                       </property>
+                                                                                       <property name="sourcePath">
+                                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/]]></string>
+                                                                                       </property>
+                                                                                       <property name="shouldUninstall">
+                                                                                               <boolean>true</boolean>
+                                                                                       </property>
+                                                                                       <property name="destinationName">
+                                                                                               <string><![CDATA[AUTHORS]]></string>
+                                                                                       </property>
+                                                                                       <property name="fileSize">
+                                                                                               <long>809</long>
+                                                                                       </property>
+                                                                                       <property name="macBinary">
+                                                                                               <boolean>false</boolean>
+                                                                                       </property>
+                                                                                       <property name="targetCheckKind">
+                                                                                               <int>0</int>
+                                                                                       </property>
+                                                                               </object>
                                                                        </installChildren>
                                                                </object>
                                                                <object class="com.zerog.ia.installer.InstallComponent" objectID="fe7d6497a66b">
@@ -7410,7 +8257,7 @@ and any path to a file to read from that file]]></string>
                                                                                <string><![CDATA[]]></string>
                                                                        </property>
                                                                        <property name="imagePath">
-                                                                               <string><![CDATA[/home/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
+                                                                               <string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
                                                                        </property>
                                                                        <property name="imageName">
                                                                                <string><![CDATA[bartonGroup.gif]]></string>
@@ -7658,6 +8505,8 @@ and any path to a file to read from that file]]></string>
                                                                <object refID="24485f85a670"/>
                                                                <object refID="f44fc598aba0"/>
                                                                <object refID="094ab0d49607"/>
+                                                               <object refID="ea43799f8a5c"/>
+                                                               <object refID="ea4379a48a5c"/>
                                                        </visualChildren>
                                                </object>
                                                <object class="com.zerog.ia.installer.GhostDirectory" objectID="3cd94e29a677">