JAL-3253 preliminary static fixes for JavaScript part 3 of 3
authorhansonr <hansonr@STO24954W.ad.stolaf.edu>
Thu, 9 May 2019 03:35:47 +0000 (22:35 -0500)
committerhansonr <hansonr@STO24954W.ad.stolaf.edu>
Thu, 9 May 2019 03:35:47 +0000 (22:35 -0500)
commit208f2c3de82e3327c4f930ab7d04f5b812ccd277
tree62aa5de9dc14c64079eac9a9c06e17b471e051b9
parent5721b73c6d5de84b21a989a8734e4c161f5dc630
JAL-3253 preliminary static fixes for JavaScript part 3 of 3

More succinct singleton class instances stored in jalview.bin.Jalview.

All 2200 instances of "static" checked.
47 files changed:
src/jalview/analysis/AlignmentSorter.java
src/jalview/analysis/scoremodels/ScoreModels.java
src/jalview/bin/Cache.java
src/jalview/bin/Jalview.java
src/jalview/ext/ensembl/EnsemblInfo.java
src/jalview/fts/service/pdb/PDBFTSRestClient.java
src/jalview/fts/service/uniprot/UniProtFTSRestClient.java
src/jalview/gui/AlignFrame.java
src/jalview/gui/Desktop.java
src/jalview/gui/IdPanel.java
src/jalview/gui/PopupMenu.java
src/jalview/gui/Preferences.java
src/jalview/gui/SliderPanel.java
src/jalview/gui/StructureChooser.java
src/jalview/gui/UserQuestionnaireCheck.java
src/jalview/httpserver/HttpServer.java
src/jalview/io/HTMLOutput.java
src/jalview/io/JalviewFileFilter.java
src/jalview/io/PIRFile.java
src/jalview/io/TCoffeeScoreFile.java
src/jalview/io/VamsasAppDatastore.java
src/jalview/io/gff/SequenceOntologyFactory.java
src/jalview/jbgui/GSliderPanel.java
src/jalview/jbgui/GStructureChooser.java
src/jalview/rest/RestHandler.java
src/jalview/schemes/AnnotationColourGradient.java
src/jalview/schemes/ColourSchemeProperty.java
src/jalview/schemes/RNAHelicesColour.java
src/jalview/schemes/ResidueProperties.java
src/jalview/structure/StructureImportSettings.java
src/jalview/structure/StructureSelectionManager.java
src/jalview/urls/IdOrgSettings.java
src/jalview/util/BrowserLauncher.java
src/jalview/util/GroupUrlLink.java
src/jalview/util/MessageManager.java
src/jalview/util/Platform.java
src/jalview/ws/SequenceFetcher.java
src/jalview/ws/SequenceFetcherFactory.java
src/jalview/ws/jws1/Discoverer.java
src/jalview/ws/jws2/AAConClient.java
src/jalview/ws/jws2/AADisorderClient.java
src/jalview/ws/jws2/Jws2Discoverer.java
src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java
src/jalview/ws/rest/RestClient.java
src/jalview/ws/sifts/SiftsClient.java
src/jalview/ws/sifts/SiftsSettings.java
src/mc_view/PDBfile.java