comment on WORD_SEP values

diff --git a/src/jalview/analysis/SequenceIdMatcher.java b/src/jalview/analysis/SequenceIdMatcher.java
index f4f305b..9d33996 100755 (executable)
--- a/src/jalview/analysis/SequenceIdMatcher.java
+++ b/src/jalview/analysis/SequenceIdMatcher.java
@@ -146,6 +146,8 @@ public class SequenceIdMatcher
     /**\r
      * Characters that define the end of a unique sequence ID at\r
      * the beginning of an arbitrary ID string\r
+     * JBPNote: This is a heuristic that will fail for arbritrarily extended sequence id's\r
+     * (like portions of an aligned set of repeats from one sequence)\r
      */\r
     private String WORD_SEP="~. |#\\/<>!\"£$%^*)}[@',?";\r
 \r