.getString("status.obtaining_mapping_with_phyre2_template_alignment"));
String fastaFile = getPhyre2FastaFileFor(pdbFile);
StructureMapping phyre2ModelMapping = new Phyre2Client(pdb)
.getString("status.obtaining_mapping_with_phyre2_template_alignment"));
String fastaFile = getPhyre2FastaFileFor(pdbFile);
StructureMapping phyre2ModelMapping = new Phyre2Client(pdb)
- .getStructureMapping(seq, pdbFile, fastaFile, " ");
+ .getStructureMapping(seq, pdbFile, fastaFile,
+ StructureMapping.NO_CHAIN);
seqToStrucMapping.add(phyre2ModelMapping);
maxChain.makeExactMapping(maxAlignseq, seq);
maxChain.transferRESNUMFeatures(seq, null);
seqToStrucMapping.add(phyre2ModelMapping);
maxChain.makeExactMapping(maxAlignseq, seq);
maxChain.transferRESNUMFeatures(seq, null);